PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04462.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 232aa MW: 26776.1 Da PI: 10.0562 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 29.3 | 2.4e-09 | 14 | 39 | 1 | 26 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegk 26 lppGfrF+Ptdeelvv+yLk+ +e++ Sme2.5_04462.1_g00003.1 14 LPPGFRFRPTDEELVVQYLKRDMEQE 39 79*******************99876 PP | |||||||
2 | NAM | 96.5 | 4.2e-30 | 37 | 112 | 55 | 128 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 e+e yfFs+r+ ky++g+r+nratksgyWkatg dk+++ + +++lvglkktLvfy+g++p+g +t+W+mheyrl Sme2.5_04462.1_g00003.1 37 EQEKYFFSTREVKYPNGNRSNRATKSGYWKATGIDKQIILRgqQQQLVGLKKTLVFYRGKSPQGCRTNWIMHEYRL 112 5789***********************************99666667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 37.097 | 1 | 134 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-45 | 10 | 134 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-25 | 15 | 112 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEKVNFMKNG VLRLPPGFRF RPTDEELVVQ YLKRDMEQEK YFFSTREVKY PNGNRSNRAT 60 KSGYWKATGI DKQIILRGQQ QQLVGLKKTL VFYRGKSPQG CRTNWIMHEY RLANTESNNH 120 PIQGNWVICR IFLKRRGSIK NKEETMTTHD ESPLVLSKIC CRDRKTSNKE LQAENTRIIF 180 YDFMGESNSN GGAASSSSSG ITDLTTTVNG ESDDHEESTS SFNSFTTFRR KN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-40 | 12 | 140 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-40 | 12 | 140 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-40 | 12 | 140 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-40 | 12 | 140 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-40 | 12 | 140 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-40 | 12 | 140 | 15 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00507 | DAP | Transfer from AT5G13180 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | Z75524 | 1e-105 | Z75524.1 L.esculentum partial mRNA (clone SENU5). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366089.1 | 1e-122 | PREDICTED: NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 4e-62 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A0V0HKA7 | 1e-121 | A0A0V0HKA7_SOLCH; Putative NAC transcription factor 29-like | ||||
STRING | PGSC0003DMT400031045 | 1e-122 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1387 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 5e-63 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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