PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04394.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bZIP | ||||||||
Protein Properties | Length: 278aa MW: 30519.3 Da PI: 10.374 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 65.3 | 1.1e-20 | 174 | 236 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ el++l+ e ++l +++ Sme2.5_04394.1_g00005.1 174 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRAELSRLRSEHDQLSAQN 236 89********************************************************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16596 | 2.3E-20 | 64 | 141 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.2E-18 | 167 | 235 | No hit | No description |
SMART | SM00338 | 5.6E-21 | 174 | 238 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.9E-19 | 174 | 236 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.403 | 176 | 239 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.31E-11 | 177 | 233 | No hit | No description |
CDD | cd14702 | 2.12E-20 | 179 | 230 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 181 | 196 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MVGEVDNTKE IAQVLNYKVG TVFTTYMELP LGTSDFLVRN AVIKGVKKQL VGWKKRLLVK 60 WLKESPMKSA GRQDSAEEAS QNGNSAHSSQ NGGTSAPHSL VNQAMAIMPM SAVGAGSVPG 120 PTTNLNIGMD YWNATASQSI PAIHGKVPSA PVAGGMVTAG SRDIVQSQMW IQDERELKRQ 180 RRKQSNRESA RRSRLRKQAE CDELAQRAEV LKEENASLRA ELSRLRSEHD QLSAQNASLK 240 ERLGEVPGRD DPRPSRNDRP LNKDTQHSSQ TEPKQGGQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 196 | RRSRLRK |
2 | 190 | 197 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013980 | 0.0 | BT013980.1 Lycopersicon esculentum clone 133025R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015166618.1 | 1e-142 | PREDICTED: transcription factor HBP-1a isoform X2 | ||||
Swissprot | Q501B2 | 5e-65 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | A0A0V0IFE1 | 1e-141 | A0A0V0IFE1_SOLCH; Putative transcription factor HBP-1a-like | ||||
STRING | Solyc08g076100.2.1 | 1e-140 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3065 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 7e-68 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
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