PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04190.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 339aa MW: 37641.8 Da PI: 9.0618 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.6 | 6.2e-29 | 166 | 225 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh Sme2.5_04190.1_g00001.1 166 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHC 225 58***************************99****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-28 | 157 | 225 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.811 | 161 | 224 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-24 | 163 | 224 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-32 | 166 | 226 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-23 | 167 | 224 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MEFTSLVDTS LDLNFKPLRV VDEAPKQEVE SNFIGLGRDV VPAKDEAGDL MEELNRLSAE 60 NKKLTEMLTI MCQNYNSLRN QLTEYLSKQN SSGSGSDHGQ NSDGSKNRKV VNNNNEIVKS 120 SVQVLNSESS SSDEDASTKK PREEHIKTKT SRVYMRTEAS DTSLIVKDGY QWRKYGQKVT 180 RDNPSPRAYF KCSFAPTCPV KKKVQRSVED QSILVATYEG EHNHCKVDNS GPIATTSPSS 240 RFNPKNNVPS GPGPTFTLDL SEPKTFPQKD PKRQVNSNTS TSNASGQKRK SPASDQQQQN 300 RPELQHFLIE QMASSLTKDP SFQAALAAAI SGKFLQNNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-19 | 165 | 224 | 16 | 74 | Probable WRKY transcription factor 4 |
2ayd_A | 7e-19 | 165 | 224 | 13 | 71 | WRKY transcription factor 1 |
2lex_A | 8e-19 | 165 | 224 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 4e-95 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001303844.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 2e-84 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A3Q7GHS3 | 0.0 | A0A3Q7GHS3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g116890.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2855 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 3e-83 | WRKY DNA-binding protein 40 |