PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03671.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 494aa MW: 54794.6 Da PI: 6.0603 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.8e-12 | 340 | 385 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L Av+YIk+L+ Sme2.5_03671.1_g00002.1 340 SIAERVRRTRISDRMRKLQELVPNM----DKQTNTADMLDFAVDYIKELE 385 689*********************7....688***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.85 | 334 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-15 | 337 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.36E-12 | 338 | 389 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.1E-14 | 339 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-9 | 340 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-13 | 340 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MDHSRFQQQP ITSGLTRYRS APSSYLSSLL SSATPVSGGG CGYARDDFSH LQNSRGSATD 60 IEQVFARFVA SIGSSNSGNF PTNQQIPTSN MNVRSDVMVP KQERLVLWFR NKSETLQQTT 120 DHASASHMNY QTQPQQIEKS SAATDNSFVF LNSASGSGGT SNLTRYNSSP AGFFDQINIK 180 NEYGAMRGIG SYGIGTNAAT ETSLLTPRNF KTQVGFSSGK PPASPRLMAP ISEFKDKVWE 240 ENSTGNEHKN DDSCITDFPM PSWEDSHILS DDFLKTEDIE IEPFPNEDAS RNQNSDGLAR 300 PPIPLAHHLS LPTSTMEKLL QDSVHLNVRA KRGCATHPRS IAERVRRTRI SDRMRKLQEL 360 VPNMDKQTNT ADMLDFAVDY IKELEKQVKS MLPLDFVHDD FGVFYDLAVH EVVAQRCSFI 420 IVHVVISITP NVPKAVWDGM NNAMSLDYFP EIFGKVAMEK DMSNVLIVVI TELTFGINLN 480 APFVEVLVCG KLAM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 1e-109 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364245.1 | 0.0 | PREDICTED: transcription factor bHLH122-like | ||||
TrEMBL | A0A0V0IJ50 | 0.0 | A0A0V0IJ50_SOLCH; Putative transcription factor bHLH-like | ||||
STRING | PGSC0003DMT400056716 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 5e-51 | bHLH family protein |