PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03426.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 249aa MW: 28627.8 Da PI: 8.5948

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03426.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139	3e-43	8	135	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 pGfrFhPt+eel++ yLk+ ++++kl+ ++i ++iy ++Pw+Lp ++ +e+ewyf ++ ++k+ + ++nr+t++g+Wkatg Sme2.5_03426.1_g00001.1 8 LPGFRFHPTEEELINLYLKRIINEDKLDY-NIIGLLNIYLYDPWKLPGLARIGEREWYFLVPINRKHGPKGKPNRTTRNGFWKATG 92 59************************9.89***********8778899**************************** PP NAM 88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +d+++ s+ ++++g+kktLvfy grapkg++tdWvm+eyrl Sme2.5_03426.1_g00001.1 93 SDRQIRSTlePKKVIGVKKTLVFYGGRAPKGTRTDWVMNEYRL 135 **99888889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.816	7	152	IPR003441	NAC domain
SuperFamily	SSF101941	7.06E-52	8	152	IPR003441	NAC domain
Pfam	PF02365	6.8E-24	9	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MSLVELQLPG FRFHPTEEEL INLYLKRIIN EDKLDYNIIG LLNIYLYDPW KLPGLARIGE 60 REWYFLVPIN RKHGPKGKPN RTTRNGFWKA TGSDRQIRST LEPKKVIGVK KTLVFYGGRA 120 PKGTRTDWVM NEYRLPHPHK DQDIVLCKVY RKAISFKVLE KRAMVEEDGA NTYLPSPDGQ 180 PIDMLASLES SKKDMYFTTC EEENHDTTVK LPELSGSDAS MEPSKFSIDT LSSPLWSTGQ 240 DLWSLFSLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-42	3	155	12	168	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-42	3	155	12	168	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-42	3	155	12	168	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-42	3	155	12	168	NO APICAL MERISTEM PROTEIN
4dul_A	9e-42	3	155	12	168	NAC domain-containing protein 19
4dul_B	9e-42	3	155	12	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-84	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	1e-84	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006367161.1	1e-145	PREDICTED: NAC transcription factor 25-like isoform X2
Swissprot	Q10S65	2e-76	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	M1AGL4	1e-144	M1AGL4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400022365	1e-144	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3531	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	4e-76	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]