PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02680.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | AP2 | ||||||||
Protein Properties | Length: 466aa MW: 51338.6 Da PI: 6.3658 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.6e-18 | 137 | 186 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a++k++g Sme2.5_02680.1_g00003.1 137 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAALKFRG 186 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.8 | 1.3e-13 | 229 | 279 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++ grW+A+ g rk+++lg f+++ eAa+a+++a+ +l+g Sme2.5_02680.1_g00003.1 229 SKYRGVTLHR-CGRWEAR---M---GqllGRKYIYLGLFDSEIEAARAYDKAAIELNG 279 89******99.7******...5...334337**********99************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.92E-13 | 137 | 196 | No hit | No description |
Pfam | PF00847 | 1.3E-9 | 137 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-15 | 137 | 195 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.833 | 138 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-31 | 138 | 200 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-17 | 138 | 194 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.0E-9 | 229 | 279 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-15 | 229 | 287 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.14E-23 | 229 | 286 | No hit | No description |
SMART | SM00380 | 3.2E-28 | 230 | 293 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.145 | 230 | 287 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-14 | 230 | 288 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 231 | 242 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 269 | 289 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MFDLNLSFDD VPEESISVPG EPAPEKLNGF LFNQMENSGT SDSSVVNIET SSTAGDDEHS 60 CSDHRPDGYA FDILKSDKEA GNRGGFVINE LFPSMNGEVG LVLSENSAES SEVRIGKAPQ 120 QRLQARKCRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YAAARAYDRA 180 ALKFRGLNAD INFEISDYEE DLKQMNNFSK EEFVHLLRRQ STGFSRGTSK YRGVTLHRCG 240 RWEARMGQLL GRKYIYLGLF DSEIEAARAY DKAAIELNGT GAITNFGSSA YEVVLGSDAE 300 IRGDAGTNHN LDLNLSISSS SYAENQHGNT SQNGNIQCQH GSNGLPEHNR EVLTSASTKL 360 RSKPLLHGQH MLTQDPLHFP TFKGSAIEKG LEVDASLKWM GQDENTCDRC PTLPLFSTAA 420 SSGFGNSAIT APSAASHQLH FGNGALSYHH SPSLTNMDLS PHYYRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244886 | 1e-106 | AC244886.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-19g7 map 10, complete sequence. | |||
GenBank | HG975449 | 1e-106 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 1e-106 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339057.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | B8AMA9 | 9e-95 | AP22_ORYSI; APETALA2-like protein 2 | ||||
Swissprot | Q84TB5 | 8e-95 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | A0A0V0IDL9 | 0.0 | A0A0V0IDL9_SOLCH; Putative ethylene-responsive transcription factor RAP2-7-like | ||||
STRING | Solyc10g084340.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 2e-91 | related to AP2.7 |
Publications ? help Back to Top | |||
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