PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02549.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 393aa MW: 45460.8 Da PI: 4.7381 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.3 | 2.8e-10 | 68 | 133 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++w+fFs++dkky++g+r++ gyWk gk + + + + + grap ge+tdWvmhey++ Sme2.5_02549.1_g00007.1 68 LSGDRQWFFFSPKDKKYPNGERSKH----GYWK--GKRSYYYM-QLSCCWSHED----AGRAPVGERTDWVMHEYTM 133 46789*************9988765....9***..55444444.2232333322....69***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 9.82 | 12 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-6 | 63 | 132 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-17 | 68 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MCGIKEFGKT VNSKSTETKG TWPQMIECCV QRVKSNNLLR LQLRLFLSDS NSTMLSLVKL 60 LTPLMCYLSG DRQWFFFSPK DKKYPNGERS KHGYWKGKRS YYYMQLSCCW SHEDAGRAPV 120 GERTDWVMHE YTMDEEELKR YQNVQDYHAL YKVFKKSSPS PKNCEQYSAP FREEDWIDDE 180 CLNPKDSVEK ESPRLQENSP NPINVVPATD NALEELLNCI GDEPVSSEPH TLDNNFAFEQ 240 FIQEEYTEST LLNQSSREVN LYNHSVVAGP SCHPYKARTS FDLTESDTSP LHLYETPEVS 300 SAPVNTKKPP NMLEEDFLED FLEMDDLLVP EPSVQNFDHQ TSNGQVFDKA AGKLETLQFD 360 AFDGLTEFDL YHDARTGRKF GWCLDIHLFH LLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-11 | 68 | 162 | 67 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-11 | 68 | 162 | 67 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-11 | 68 | 162 | 67 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-11 | 68 | 162 | 67 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-11 | 68 | 162 | 70 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-11 | 68 | 162 | 70 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-11 | 68 | 162 | 70 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-11 | 68 | 162 | 70 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-11 | 68 | 162 | 70 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-11 | 68 | 162 | 70 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-11 | 68 | 162 | 70 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-11 | 68 | 162 | 70 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-11 | 68 | 162 | 67 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-11 | 68 | 162 | 67 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF437523 | 1e-132 | KF437523.1 Solanum tuberosum putative membrane bound NAC transcription factor 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074110.1 | 1e-149 | NAC domain-containing protein 17-like | ||||
TrEMBL | M1D2U0 | 1e-148 | M1D2U0_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1D2U1 | 1e-149 | M1D2U1_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g072220.2.1 | 1e-147 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400079995 | 1e-145 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3212 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 2e-42 | NAC domain containing protein 17 |