PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_02073.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 48380.6 Da PI: 5.69 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.6e-13 | 266 | 312 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L+ Sme2.5_02073.1_g00002.1 266 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 312 799***********************6.....4*****************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.1E-52 | 16 | 201 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.218 | 262 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.03E-18 | 264 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.27E-14 | 265 | 315 | No hit | No description |
Pfam | PF00010 | 1.1E-10 | 266 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-16 | 266 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-16 | 268 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 438 aa Download sequence Send to blast |
MALPPPADIN QPPLDLQQML QYVVKSQPEW WAYAIFWQTS TDDEGKNFLA WGDGYFQGGG 60 VANNNKTGGT SSSLEAQAQS ERKNVIKGIQ ALMDGNGDTT TLLDDADVTD TEWFYVMSLA 120 RSFSAGDGSV TGKAFSRGDF LWIAGAAEFQ IYYSCERAKE AQIHGIQTLV CIPISNGVLE 180 LASTDLIKQN LSLVQQVKSM FLCSPPIQFL QETICFADIG LVTGLQQDRN DAKLGENSKK 240 QQPIVAKKRG RKPKGREDDT NMAALNHVEA ERQRREKLNH RFYALRSVVP NVSRMDKASL 300 LSDAVSYINQ LKARVDELES QIIDPASNKK LKITAESTSA DNQSTTTSSE EQVIRANAPA 360 EIEVKIVGTD AMIRVQSENV DYPSAKFMTA LQHLQIQVHH ASISSVNNLV LHDVVVKLPQ 420 GLNTEDELRT ALLARLKH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-33 | 11 | 201 | 1 | 192 | Transcription factor MYC3 |
4rqw_B | 4e-33 | 11 | 201 | 1 | 192 | Transcription factor MYC3 |
4rs9_A | 4e-33 | 11 | 201 | 1 | 192 | Transcription factor MYC3 |
4yz6_A | 4e-33 | 11 | 201 | 1 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357552.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | M1BKB3 | 0.0 | M1BKB3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400047220 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00870.1 | 3e-82 | bHLH family protein |