PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01982.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 299aa    MW: 33336.3 Da    PI: 5.8831
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01982.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.28.4e-36101091101
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              aCa+Ck++rr+C  +C+lapyfp++qpk f+n+h+lFG+sn+lk+lk++++++++ am+s++y+A+ar + PvyG+v+ i++l  +
  Sme2.5_01982.1_g00003.1  10 ACAVCKYQRRRCH-ECPLAPYFPSDQPKMFRNAHRLFGVSNILKILKEIDPSQKKVAMKSIIYQANARDKHPVYGCVAEIQNLFFN 94 
                              7***********6.7*********************************************************************** PP

                   DUF260  87 leqlkaelallkeel 101
                              ++  ++el++++++l
  Sme2.5_01982.1_g00003.1  95 IQLYEEELQAVHAQL 109
                              **********99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7639109IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-3410106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTLKGGTSQA CAVCKYQRRR CHECPLAPYF PSDQPKMFRN AHRLFGVSNI LKILKEIDPS  60
QKKVAMKSII YQANARDKHP VYGCVAEIQN LFFNIQLYEE ELQAVHAQLA FYRQQQEIST  120
TTLSDSVSQI QLGMLPPGVA APPPTNGVNA NGLTLFHQDM PSQYNAANAA LPVQSYPSYS  180
NNNYAAYSNT TFVDPKENNA VNSLWIQQSY GNSVCNNNTM IMQSPSQPIV VPQEATQEYD  240
DIHPFFDPID DRQSYINSKE AYDSSSESSL KDTRQSVEHV AENELKSAAA CFTLTSING
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-2761127114LOB family transfactor Ramosa2.1
5ly0_B8e-2761127114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367708.11e-178PREDICTED: LOB domain-containing protein 27-like
TrEMBLM1B0F51e-176M1B0F5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000342881e-177(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-46LOB domain-containing protein 27