PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01807.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 573aa MW: 64469.6 Da PI: 4.5255 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.6 | 1.7e-51 | 32 | 158 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 ppGfrFhPtdeelv +yLk+k+ ++++ l ++i+evd+yk+eP+dLp +k+k+++++w+fFs+rd+ky++g r+nr k+gyWka Sme2.5_01807.1_g00001.1 32 PPGFRFHPTDEELVLYYLKRKICRRRILL-DAIAEVDVYKWEPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARSNRGSKHGYWKA 116 9*************************999.99**************96559999***********************99******* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd+++++ ++++vg+kktLvfykgrap ge+tdWvmhey++ Sme2.5_01807.1_g00001.1 117 TGKDRTITC-NSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTM 158 *********.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-59 | 27 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.804 | 31 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-26 | 32 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MRLLMNSSGP SSSSPCKEVK VSECFGENSV FPPGFRFHPT DEELVLYYLK RKICRRRILL 60 DAIAEVDVYK WEPEDLPDLS KLKTGDRQWF FFSPRDRKYP NGARSNRGSK HGYWKATGKD 120 RTITCNSRAV GVKKTLVFYK GRAPVGERTD WVMHEYTMDE EELKRCQNVQ DYYALYKVFK 180 KSGPGPKNGE QYGAPFREED WIDDECLNPK VSVEEESPRL QENSPKPINV VPAADDVLEE 240 LLNRIADEPV PFEPFTVDNN FALEQFLQEE DTESTLLNQS SREVNLYNHC AVAGPSCQPY 300 NAKTSFDLTE SGTSLLHLHE APEVSSAPVN PKKPPYILEE DFLEDFLEMD DLLVPEPTVQ 360 NFDHQTSNGQ VFAKHAGNLE TLQFDGFDGL TEFDLYHDAP SLLDNEGIPT VGQIAEPYAN 420 NFVNGITCAD STTYMSTFQN DMMNNQQMQL NHENQISNQF WTHDGKFGVF NSIEGDQSVV 480 DQATSGVVYD NNMANHPMGA NQNLAKKDDG TQSWFSSNLW SFVDSIPTTP ASAAESALVV 540 NRAFERMSSF SRLKLNVGNM NVAAGTSAKM AGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-48 | 31 | 158 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF437523 | 0.0 | KF437523.1 Solanum tuberosum putative membrane bound NAC transcription factor 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074110.1 | 0.0 | NAC domain-containing protein 17-like | ||||
TrEMBL | U5Q2T9 | 0.0 | U5Q2T9_SOLTU; Putative membrane bound NAC transcription factor 2 | ||||
STRING | Solyc04g072220.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3212 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-114 | NAC domain containing protein 17 |