PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00865.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 246aa MW: 28390.1 Da PI: 5.931 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.5 | 2.4e-13 | 155 | 227 | 12 | 88 |
HTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 12 ksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ++ +++p +fa++ + k ++l +e+g+ W v++ + +++++ +++GW eF ++n++ g ++ Fkl++ + Sme2.5_00865.1_g00004.1 155 HTNFMTIPMRFAARTnifD-----LKNMRLVNEKGKAWGVEI--EHTGCAVRIKRGWAEFRRQNKISIGQTCRFKLIQGH 227 45779******98884443.....347***************..9999***************************99743 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.45E-14 | 141 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-15 | 143 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.646 | 144 | 238 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.01E-10 | 145 | 236 | No hit | No description |
SMART | SM01019 | 5.1E-5 | 147 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-11 | 154 | 232 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MLTKTCLLKT DVAGIWWKAK IVREKPNYFI YEEDWSHDME IVASDSSLDI SDHSAKNLSY 60 GPLAEKRKRQ EGKEEHDIPI NIQTNATITE EEEDDIPVNL QTNANIIEEE ESLDKEVREA 120 NSGSDEDGPK NSSRYSLVNF DCDDPYFEIV IKKTHTNFMT IPMRFAARTN IFDLKNMRLV 180 NEKGKAWGVE IEHTGCAVRI KRGWAEFRRQ NKISIGQTCR FKLIQGHAAI VLQVYKIPTP 240 RSLQHY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015162984.1 | 2e-71 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | M1DLV3 | 2e-80 | M1DLV3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400091092 | 3e-81 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11726 | 4 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 7e-09 | B3 family protein |