PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00735.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 267aa MW: 30314.9 Da PI: 6.6755 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 5e-12 | 89 | 141 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +h e+Er+RR+++ + ++ Lr+ lP + ++K s ++ +A +YI +Lq Sme2.5_00735.1_g00008.1 89 KKLMHREIERQRRQEMSTLYASLRQKLPLeN---IKGKRSTSDHILEAANYIEQLQ 141 5789*************************66...*********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.77E-15 | 85 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.33E-10 | 86 | 145 | No hit | No description |
PROSITE profile | PS50888 | 13.052 | 88 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-9 | 89 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-9 | 90 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.001 | 94 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 267 aa Download sequence Send to blast |
MFPLQQDDDA NDSHRQLPFP LSQPYTNPSN FIFQQDLLTD FAPFDSLDLG DNNLTFNYNN 60 NDNNNNNKDQ RGNRLGNSSV VSTDDNKQKK LMHREIERQR RQEMSTLYAS LRQKLPLENI 120 KGKRSTSDHI LEAANYIEQL QKNVKNLEER REKLKKESIG LSNIPRSGSS TASDSSPAAI 180 VMVKECLDGM EILVNCGLNN EGFRLSRVLQ VLFQEGLTIV NCSCAKINNT TVLHTIRTEV 240 SSYQPRINVD VIQQKLADTI HDNAGFK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 149 | 156 | RREKLKKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC211020 | 4e-39 | AC211020.2 Solanum lycopersicum chromosome 6 clone C06HBa0003K02, complete sequence. | |||
GenBank | HG975518 | 4e-39 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577192.1 | 1e-129 | PREDICTED: transcription factor bHLH36-like | ||||
TrEMBL | A0A1U8H158 | 1e-128 | A0A1U8H158_CAPAN; transcription factor bHLH36-like | ||||
STRING | Solyc06g035490.2.1 | 1e-114 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-28 | bHLH family protein |