PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00442.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 174aa MW: 20593.7 Da PI: 10.0904 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.7 | 1.1e-19 | 10 | 132 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 GfrFhP d+el+ +yLk+ + +k l+ ++ik +++ +++Pw++ ++ek +yf s+ + +++ k+ +r++ +g+Wk + Sme2.5_00442.1_g00004.1 10 LGFRFHPMDKELI-NYLKNFMLRKILPPIDFIKVKEVFgDSQPWQIM----EGEKTCYFLSRLTRFKNSTKKFSRTVGTGTWKGQA 90 6************.9*********98887889988766268*****6....468899**********99***************** PP NAM 88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+k++ + k+ ++g k++L + + +k ++ + +m+ey l Sme2.5_00442.1_g00004.1 91 KSKSISDGsrKNVTIGYKRSLRYE-SDVEKEQNGKSLMKEYFL 132 *****997556667********98.555555788999**9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-18 | 7 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.775 | 8 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-13 | 11 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MSSSKSKHTL GFRFHPMDKE LINYLKNFML RKILPPIDFI KVKEVFGDSQ PWQIMEGEKT 60 CYFLSRLTRF KNSTKKFSRT VGTGTWKGQA KSKSISDGSR KNVTIGYKRS LRYESDVEKE 120 QNGKSLMKEY FLPEEYVKRS RYNDIFVICR IKQKKQKEDA DYKEVTEEEV DEVI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549492.1 | 1e-62 | PREDICTED: NAC domain-containing protein 78-like | ||||
Refseq | XP_016549495.1 | 2e-62 | PREDICTED: NAC domain-containing protein 78-like | ||||
Refseq | XP_025884214.1 | 2e-63 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A2G2Y690 | 2e-62 | A0A2G2Y690_CAPAN; Uncharacterized protein | ||||
STRING | XP_009761286.1 | 4e-52 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1024 | 13 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 3e-14 | NAC domain containing protein 2 |