PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00368.1_g00013.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 436aa    MW: 48354.3 Da    PI: 5.9344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00368.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.2e-06119139323
                              ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                              C+ Cgk F++   L  H+rtH
  Sme2.5_00368.1_g00013.1 119 CKECGKEFPSMKALAGHLRTH 139
                              ********************9 PP
2zf-C2H215.64.5e-05148170123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C++Cgk F +   L  H+++H
  Sme2.5_00368.1_g00013.1 148 HICEKCGKGFASMRALFGHMKVH 170
                              68*******************99 PP
3zf-C2H212.40.00049366388123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kCp+C k+F++  +L  H r H
  Sme2.5_00368.1_g00013.1 366 HKCPICFKVFPSGQSLGGHKRAH 388
                              79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.1E-4932IPR007087Zinc finger, C2H2
SMARTSM003550.085931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.0085117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907117144IPR007087Zinc finger, C2H2
SuperFamilySSF576671.0E-10118170No hitNo description
PfamPF139124.9E-8118141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-5119147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4148171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.074148175IPR007087Zinc finger, C2H2
PfamPF139128.7E-4148172IPR007087Zinc finger, C2H2
SMARTSM003559.9E-4148170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
SuperFamilySSF576674.27E-5362390No hitNo description
PfamPF139124.5E-11365389IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162366388IPR007087Zinc finger, C2H2
SMARTSM003550.1366388IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280368388IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEETRGQKFI CKFCDKSCDS GKSLGGHMRG HLALISAAKN QKDEADSKMG SEEEEEAVNT  60
HEDLSISEQS DGSISQEKDN HISIGDDGDS IGYGLRENPR KSWRVSDLKN CSLVTTNICK  120
ECGKEFPSMK ALAGHLRTHS KKGIEKCHIC EKCGKGFASM RALFGHMKVH SKRLRVDDQD  180
SESKQSSSDF DTVCPVRKKR SKIKYKMDAN SSFSAISEVD EMEEAARCLM MLSSGVTDWD  240
EYISISENSK NENLNLESES FHSVKGISAD AFTVKQLSRT VFSDSDCVDG YGKNYEISEF  300
SDRLMLINTE ITKVCYSTEM QFGNDPSSSV VMEDLAFLNS CSLKKGVDLQ IGVNRTSLDP  360
IKSKVHKCPI CFKVFPSGQS LGGHKRAHYT GFTESKTKET MSFDLNNPVN AVDGGEKDVE  420
LKLWWVGSGD ALIIEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064902.10.0zinc finger protein ZAT1-like
TrEMBLA0A3Q7FX210.0A0A3Q7FX21_SOLLC; Uncharacterized protein
STRINGSolyc02g088670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-17C2H2-like zinc finger protein