PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00343.1_g00013.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 300aa    MW: 33817.4 Da    PI: 7.3134
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00343.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031122144123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C++sF++   L  H  +H
  Sme2.5_00343.1_g00013.1 122 YQCKTCNRSFPSFQALGGHRASH 144
                              9***********99999998887 PP
2zf-C2H213.30.00024203225123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg  F++   L  H+r+H
  Sme2.5_00343.1_g00013.1 203 HECSICGAEFTSGQALGGHMRRH 225
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.62E-9121144No hitNo description
PfamPF139128.2E-13121146IPR007087Zinc finger, C2H2
SMARTSM003550.03122144IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.679122149IPR007087Zinc finger, C2H2
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576675.62E-9198225No hitNo description
PfamPF139121.0E-12202226IPR007087Zinc finger, C2H2
SMARTSM003550.01203225IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723203225IPR007087Zinc finger, C2H2
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEVHQVRQED QDQNQDQEQD RQLNMVIKRR RTKRPRPPSP LALGITTSSC STVEGGELVD  60
GHVANSSLRS NNCDGVDDKI VRNNNMNQEE EDMANCLILL AQGHNYNQKS SSSHQSPMLD  120
VYQCKTCNRS FPSFQALGGH RASHKKPKTL EDQVKISKPF DHQQVENNTR LKLSNNDDHV  180
TTLSLQIPSN TITTTNKNKN RVHECSICGA EFTSGQALGG HMRRHRPLPN SISIASNHHS  240
HDQESHHHDQ ATKNTRAFLS LDLNLPAPED DHRPENPKFT FATKEQVIVF SASPLVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13236KRPRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354388.11e-150PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X42e-50ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLM0ZX271e-149M0ZX27_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000098711e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.17e-50C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]