PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00081.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 326aa    MW: 37964.9 Da    PI: 6.2021
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00081.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.77.2e-1940122286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                              Wt+qe+  Li+a++e++ +l++g+lk+ +Weev++ + ++ gf   ++s++qC++k+e+l+kry++++           ++++yfd
  Sme2.5_00081.1_g00004.1  40 WTHQETFNLIQAYQEKWYSLKKGQLKASQWEEVAITVaARCGFdepSKSATQCRHKIEKLRKRYRAERLKPYP------NSWQYFD 119
                              ***********************************9966667766579*****************98766664......3599999 PP

                 trihelix  84 qle 86 
                               ++
  Sme2.5_00081.1_g00004.1 120 LMD 122
                              887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-1939124No hitNo description
PROSITE profilePS500906.2639100IPR017877Myb-like domain
SMARTSM005952.8E-547129IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MATPSSPPPL LLPPSETNQP HISPIPPIPS SQKKTQPIPW THQETFNLIQ AYQEKWYSLK  60
KGQLKASQWE EVAITVAARC GFDEPSKSAT QCRHKIEKLR KRYRAERLKP YPNSWQYFDL  120
MDRMERGPLP IAAHPVAMVK CQNSNSMSDQ RYYDTDSDEV DVSYMDLRKN KCRSINHIVR  180
GEMDMMGVNV ADNRNVNRMV KDRNFDVMRG MRNSMNEKRK GYFENVGINN NNDDDDVEEE  240
VEEDEDDEDG EGSVGGSELA AEIRGFAERF MRMESKKIEM MKETERYRME MEKRRMEMIL  300
ETQRNLIDTI NSVVGSHKKV KVAHEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352691.10.0PREDICTED: uncharacterized protein LOC102598294
TrEMBLA0A0V0HQF00.0A0A0V0HQF0_SOLCH; Putative trihelix transcription factor ASIL1-like
STRINGPGSC0003DMT4000517880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124661516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-32Trihelix family protein