PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00072.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 682aa    MW: 74339.4 Da    PI: 7.062
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00072.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07280300526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C+ f++ G C++Gd C +aHg
  Sme2.5_00072.1_g00008.1 280 PCPEFRK-GACQRGDMCEYAHG 300
                              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.4E-1516141IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-1617152IPR020683Ankyrin repeat-containing domain
PfamPF127961.4E-854128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.165989IPR002110Ankyrin repeat
CDDcd002041.02E-1259160No hitNo description
PROSITE profilePS5029715.51259159IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001994126IPR002110Ankyrin repeat
PROSITE profilePS5008810.65994129IPR002110Ankyrin repeat
SMARTSM003562.0E-5275301IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4280300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.568280302IPR000571Zinc finger, CCCH-type
SMARTSM0035654310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MTMNNPTVET EDTFASLLEL AANNDIEAFK IWIERDVASV HEVGLWYGRQ KGSKQMVLDY  60
RTPLMVAATY GSIDALKQIL SLPEVDVNRS CGHDKSTALH CAASGGSVNA AEAVKLLLGA  120
GADPHCKDIN GHYPIDVIVV SPRFQQVKSC LESLLMTNAI GDCKLRVSVS TSSSNSPPHS  180
PSPGNRSPSS ASEPPSSPKS AKSSDLLVYS IPEKKEYPID PSLPDIKNDI YSSDEFRMFS  240
FKIKPCSRAY SHDWTECPFL HPGENARRRD PRKFHYSCVP CPEFRKGACQ RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGI DCNRRVCFFA HKQEDLRPLY VSTGSAVPSP CGNTAAANAM  360
DFAAAMGLMP GSPSSVSVMS PPPFTPPVSP SANGISGMGW GQQNAPPLHL PGSFVHSSRL  420
RSSLNSRGIH AADLSTYPDF DVQQQLLNEF SCLSQRSSMN SNYLNHSARP MTPTRANLED  480
YLSAESSSPR YSDQALAPAV FSPTHTSAVS SPFQQQQQQN LFSSINTNFS PKNIDNPLLQ  540
ASFGVPSPGR MSPRAMEPIS PRNSRVSILA QRDRQQQFRN LSSRDLGSNV SAIVGPPAGT  600
WSEWGTATGK PDWAVNSEDS GRLRQSSSFK LGNNGKEPDL SWVQSLVKES PPEMMKDKCV  660
PRVSGPEVTG ACADLGEDPF PD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249271.10.0zinc finger CCCH domain-containing protein 24
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A3Q7IKM20.0A0A3Q7IKM2_SOLLC; Uncharacterized protein
STRINGSolyc10g080260.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]