PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00064.1_g00028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 208aa MW: 24113.3 Da PI: 7.8785 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 72.5 | 1.1e-22 | 5 | 129 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +G+rFhPtd el+ + Lk+ +g+ +++ + i+ +di+ Pw++ ++eek yf + +k++++ +r r+ ++g+Wka+ Sme2.5_00064.1_g00028.1 5 MGVRFHPTDTELI-NLLKRCFKGEIfFHEGSLIHIADIHGDqPPWEIF-GSDSEEKVRYFITLLKKRKSEYTRFARTCAKGTWKAQ 88 7************.8899999999854444569999**976368***6.566777788**************************99 PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++++ +g +vg k++++f +++ g++ +W+m+ey++ Sme2.5_00064.1_g00028.1 89 TGENSIKNNhNGIVVGFKRSFTFV--TKEPGQNKTWLMKEYSV 129 99999998868889*********9..566678999******86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.825 | 3 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-25 | 4 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-14 | 5 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MSTSMGVRFH PTDTELINLL KRCFKGEIFF HEGSLIHIAD IHGDQPPWEI FGSDSEEKVR 60 YFITLLKKRK SEYTRFARTC AKGTWKAQTG ENSIKNNHNG IVVGFKRSFT FVTKEPGQNK 120 TWLMKEYSVA HDFFRENNHI PKENFVICRI KKKTNKEKVN AVEIQDCDVA GIINHMLFTP 180 NHNNYSTKED QDEWDSIIDT VCDTNCSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348012.1 | 7e-86 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | M1E0Z4 | 3e-85 | M1E0Z4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400097596 | 5e-86 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76420.1 | 5e-16 | NAC family protein |