PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00003.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ARF | ||||||||
Protein Properties | Length: 958aa MW: 105943 Da PI: 4.9046 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.4 | 1.5e-24 | 175 | 276 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v Sme2.5_00003.1_g00017.1 175 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSV 259 99*********************999*****9555554.49********************************************* PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 +F ++++ +l+++v+r+ Sme2.5_00003.1_g00017.1 260 LFI--RDEKSQLLLGVRRA 276 ***..45677789999997 PP | |||||||
2 | Auxin_resp | 116.9 | 1.7e-38 | 301 | 384 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt++g+ dldp+rWp+SkWr+L+ Sme2.5_00003.1_g00017.1 301 AAHAAANRSTFTIFYNPRACPSEFVIPLAKYRKSVYsTQLSVGMRFGMMFETEESGKRRYMGTISGIGDLDPLRWPGSKWRCLQ 384 79*********************************989*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.18E-46 | 162 | 304 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-42 | 168 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.35E-22 | 174 | 275 | No hit | No description |
PROSITE profile | PS50863 | 13.211 | 175 | 277 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-22 | 175 | 276 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-24 | 175 | 277 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.8E-34 | 301 | 384 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.6E-8 | 839 | 931 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.756 | 845 | 929 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.81E-9 | 864 | 924 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 958 aa Download sequence Send to blast |
MGFREDKMYD GFFGFVFGVE VKEITEVFMG SVEVKNKPGS LVSGAHTLLE EMKLLKEMQD 60 HTGGGRKLIS SELWHACAGP LVTLPQVGSL VYYFPQGHSE QVAVSTNRTA TSQIPNYPNL 120 ASQLLCQVHN VTLHADKETD EIYAQMSLQP VNSEKDVFPI PDFGLKPNKH PTEFFCKTLT 180 ASDTSTHGGF SVPRRAAEKL FPPLDYSMQP PTQELVVRDL HDNTWTFRHI YRGQPKRHLL 240 TTGWSMFVGA KRLRAGDSVL FIRDEKSQLL LGVRRANRQQ ASLPSSVLSA DSMHIGVLAA 300 AAHAAANRST FTIFYNPRAC PSEFVIPLAK YRKSVYSTQL SVGMRFGMMF ETEESGKRRY 360 MGTISGIGDL DPLRWPGSKW RCLQVEWDEP GCGDKQNRVS PWEVETPESL FIFPSLTAGL 420 KRPYQSTFLG AQTEWDSLMQ HRPFMLVPEN VYGDLQSSSI SNLWSEQLMK MLMRPPSGVT 480 GLQCGVPTVQ DIKTALPQEA RNDIQPAGSQ KPELTTVEST PAQSETNSEV ILNQPAGVVN 540 SISSQQATLP LKSQPPEKVE TDTVGKSSEP RKETSNASVK LDQFQCNEDK VTTKPASPHE 600 LPTDASATAS QHNSFSQLQA SPWLIPHNPQ IDSAGSNNLL QCSTNNEWNL SPLQSAAGIL 660 RYPVSTSTLT KHDNSYMLPD TIGAALAPMG QDMWDHQLND VKCFSQTNLQ VPLDMTNMQF 720 LPDSYGFKDL SEESHNQSDI YSCLNFDSNS GSTVIDNSVS STVLDEFCTL KPTDFQNPSD 780 FLLGNISSSQ DVQSQITSAS LADSQNFSVQ EFADNSGGAS SSNVNFDECN LLQNSSWQQV 840 APRVRTYTKI QKAGSVGRSI DVSGFKNYEE LCFEIERMFG LEGLLNDTRG SGWKLVYVDF 900 ENDVLLVGDD PWEEFVGCVR CIRILSPTEV QQMGEEGMQL LNSAGLQGIN GSTSEFPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 47 | 409 | 32 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM195248 | 0.0 | HM195248.1 Solanum lycopersicum auxin response factor 5 (ARF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074004.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A3Q7H3B0 | 0.0 | A0A3Q7H3B0_SOLLC; Auxin response factor | ||||
STRING | Solyc04g081240.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5859 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |