PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00002.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 465aa MW: 50705.1 Da PI: 8.67 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.2 | 2.1e-11 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Sme2.5_00002.1_g00015.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73 6899********************97 PP | |||||||
2 | zf-CCCH | 40.4 | 4.8e-13 | 125 | 150 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ Sme2.5_00002.1_g00015.1 125 GQPECQYYLKTGTCKFGATCKFHHPK 150 5799********************96 PP | |||||||
3 | zf-CCCH | 38.8 | 1.6e-12 | 172 | 196 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Sme2.5_00002.1_g00015.1 172 ESECAYYMRTGQCKFGSTCKFHHPQ 196 679********************97 PP | |||||||
4 | zf-CCCH | 37.8 | 3.2e-12 | 325 | 351 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Sme2.5_00002.1_g00015.1 325 PGQPECQFYMKTGDCKFGAVCRFHHPR 351 5789*********************96 PP | |||||||
5 | zf-CCCH | 40 | 6.3e-13 | 371 | 397 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Sme2.5_00002.1_g00015.1 371 PGEPLCIFYSRYGICKFGPSCKFDHPM 397 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.295 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-8 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 51 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-4 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.394 | 123 | 151 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-6 | 123 | 150 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-10 | 126 | 150 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 127 | 152 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 129 | 149 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.943 | 169 | 197 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-5 | 169 | 196 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 170 | 197 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-10 | 172 | 196 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 175 | 195 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 324 | 352 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 324 | 351 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 326 | 351 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 328 | 354 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-5 | 330 | 354 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 370 | 398 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 370 | 397 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-10 | 372 | 397 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 373 | 397 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-4 | 375 | 395 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRESIES GHYPVRDGEP DCSYYIRTGL 60 CRFGSTCRFN HPPNRKLYTR QQAYLGTAIQ LGSFSFVGDN GGSQSSLWRA IATARMKGEY 120 PERLGQPECQ YYLKTGTCKF GATCKFHHPK DKAGIAGRVT LNVLGYPLRP NESECAYYMR 180 TGQCKFGSTC KFHHPQPSNM MVSLRGSPVY PPVPSATTPG QLSYPLSRGS FIPGARWQGP 240 SGYTPLIVPQ GVVSVPGYAY SGQMGSVSPS ESQQQTAGNN QVYGASRSSD PATMGSQGVT 300 SPYRQASGPM GYYALQGENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERLIPPPDC 360 LLSPIGLPLR PGEPLCIFYS RYGICKFGPS CKFDHPMTVF TYSIASSSTT DAPTVQRLLG 420 SSSGTSALNM TSEGLAETVS TKPRRLSLSE TRKMPSGDNN IDREG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014160 | 0.0 | BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353234.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | M1BC39 | 0.0 | M1BC39_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400041844 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5289 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-175 | zinc finger protein 1 |