PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G497500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 286aa    MW: 32214.4 Da    PI: 7.8839
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G497500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17391331100
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+l     + +  l+lp+kf++e g    ++ +l+l       W+v++  + k+g ++l++GWk+F++a++L++g ++vF++dg   ++
  Sevir.9G497500.1.p  39 FFKIL--LPGMYEEALRLPNKFVQELGAR--RDLKLRLAGAGMPLWDVEVFADEKRGDVYLAQGWKKFARAHDLRDGYVLVFRYDG-GAAT 124
                         78888..444555569*******999866..7789***************99********************************98.8888 PP

                         .EEEEE-SS CS
                  B3  92 lvvkvfrks 100
                         l ++vf++s
  Sevir.9G497500.1.p 125 LAITVFDRS 133
                         9****9985 PP
2B344.92.1e-141762501287
                         HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +++ l +p +f ++hg+  ++ ++l+     grsW+v+l  ++++++    + l+ GW +F+ +ngL++gD++ Fk++++
  Sevir.9G497500.1.p 176 QNQYLNVPVEFQDAHGYARRRRVELR---MGGRSWSVNL--KRGRRAlgdrTALKYGWHQFCVDNGLEVGDTCFFKVIRE 250
                         6678999********99987876666...478*******..4444444556*************************8874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-1737135IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-1937131No hitNo description
PROSITE profilePS5086312.87237133IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-1738135IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-1339133IPR003340B3 DNA binding domain
PfamPF023621.6E-1439132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-22159278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-15161251IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0046163256IPR003340B3 DNA binding domain
CDDcd100171.35E-12163251No hitNo description
PROSITE profilePS5086311.73165280IPR003340B3 DNA binding domain
PfamPF023622.3E-11176250IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MPAGVGRPRR GSSKEQKAAA NRDGMEEEMA GLSLSDFEFF KILLPGMYEE ALRLPNKFVQ  60
ELGARRDLKL RLAGAGMPLW DVEVFADEKR GDVYLAQGWK KFARAHDLRD GYVLVFRYDG  120
GAATLAITVF DRSTCRKQYV HAGAAGGGKA GRRSLAIAEP SQFTVSLRQC NLGTKQNQYL  180
NVPVEFQDAH GYARRRRVEL RMGGRSWSVN LKRGRRALGD RTALKYGWHQ FCVDNGLEVG  240
DTCFFKVIRE GPCVDDDDDE WEDEWEDDEH VLQVEVRKKD GTMLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G497500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985224.10.0B3 domain-containing protein Os03g0212300
SwissprotQ10Q265e-90Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLK4ADG10.0K4ADG1_SETIT; Uncharacterized protein
STRINGSi036918m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.15e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]