PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G296700.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 505aa MW: 58785.2 Da PI: 9.6901

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G296700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.7	1.5e-07	2	36	57	90
FAR1 57 etrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + r++Cka +k+k ++ ++ w ++++leHnH+l Sevir.9G296700.1.p 2 SMRCECKAFVKIKWNRkKDYWFFERIRLEHNHPLH 36 579********999899************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-4	2	36	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MSMRCECKAF VKIKWNRKKD YWFFERIRLE HNHPLHSSLT VTQFLRIQKD NDPIVMGIVD 60 QMHRCGASHN TTVNVLAEFY GGRQNFTFTE MDLRNMKAAT AREERENDTP KLLEFFKEMK 120 AQNEYFYYEM QEEQANTFEW LYGAFQNYLF GSSDPRWILT SVQKTQHRLC RWHMLKKYKV 180 ELKKLYKIQD GLKIKLLTVI NHPLTPTEFE PAWNELGLWE SRKLWVAAYL KPLYCGRMTS 240 TQRSESVSKM IRGSGFIVHM RCMSKFARRM LDFIQHTNHT AGGETHWSQA GNLRLTLQPF 300 NGHLSRVETY IYSTAFRIDP HPNEVDVYLV THTDQSWQYA WFQHSFRVEA DVRSEYIMKR 360 YTRGARTVVM WDRHGIVNSG PRCESDQYKT KKLVEIVMVA VRACRKTNPG FEKGYEQLTA 420 LVEWGETIAR VQILECAPRE ARTKGRKYGG KQVVNDHASS SKAPGQQTCG YCGSLGHYST 480 GCDVNLDNAN KKRGASGSLW GKMG*

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MSMRCECKAF VKIKWNRKKD YWFFERIRLE HNHPLHSSLT VTQFLRIQKD NDPIVMGIVD  60
QMHRCGASHN TTVNVLAEFY GGRQNFTFTE MDLRNMKAAT AREERENDTP KLLEFFKEMK  120
AQNEYFYYEM QEEQANTFEW LYGAFQNYLF GSSDPRWILT SVQKTQHRLC RWHMLKKYKV  180
ELKKLYKIQD GLKIKLLTVI NHPLTPTEFE PAWNELGLWE SRKLWVAAYL KPLYCGRMTS  240
TQRSESVSKM IRGSGFIVHM RCMSKFARRM LDFIQHTNHT AGGETHWSQA GNLRLTLQPF  300
NGHLSRVETY IYSTAFRIDP HPNEVDVYLV THTDQSWQYA WFQHSFRVEA DVRSEYIMKR  360
YTRGARTVVM WDRHGIVNSG PRCESDQYKT KKLVEIVMVA VRACRKTNPG FEKGYEQLTA  420
LVEWGETIAR VQILECAPRE ARTKGRKYGG KQVVNDHASS SKAPGQQTCG YCGSLGHYST  480
GCDVNLDNAN KKRGASGSLW GKMG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G296700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022681792.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	K4AKZ6	0.0	K4AKZ6_SETIT; Uncharacterized protein
STRING	Si039575m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16437	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	5e-08	FAR1-related sequence 1

Link Out ? help Back to Top
Phytozome	Sevir.9G296700.1.p