PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G178200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 279aa    MW: 29571.1 Da    PI: 9.2078
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G178200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.44.3e-191150342
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        i n+s r  tf kRr+g++KKA+EL +LCd++++v+++++
  Sevir.9G178200.1.p 11 IANDSTRRATFKKRRKGLMKKASELATLCDVDACVVVYGE 50
                        89************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.516150IPR002100Transcription factor, MADS-box
CDDcd002661.00E-34285No hitNo description
SuperFamilySSF554553.27E-25395IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-11323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-191150IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MARKKVTLQW IANDSTRRAT FKKRRKGLMK KASELATLCD VDACVVVYGE GESQPEVWPG  60
APKVAEVLAR FKAMPELDQC KKMMDMEGFL NQRIEKLREQ LHKAQRENRE RETTILLHDA  120
VAGRRPAGLA GLSVEEIASL GWMVENRIHG VRTAIERLHG QGQDGPAAAT LQLQLPQVTG  180
LPLVPYGGGG IGPPAPGSRD VMMQAPPHQQ AAWLMDVAKA GGDLGALAYS GFGGGRGSFV  240
GGAGTSAAGA DMLPPQLGNM GAGFAWADPA GLSFPPPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLQWIANDSTRRATFKKRR
22125KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G178200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275261e-164KJ727526.1 Zea mays clone pUT5386 MADS transcription factor (MADS66) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661276.11e-164uncharacterized protein LOC101770299
TrEMBLA0A368SHS91e-162A0A368SHS9_SETIT; Uncharacterized protein
STRINGSi038973m1e-163(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-38AGAMOUS-like 80