PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G164400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 334aa MW: 38126.9 Da PI: 10.1181 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.8 | 1.7e-17 | 36 | 118 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++rlvlp k a ++ gk s+ ++le++sg +++v++ + + gr l++GW+ Fv+a++Lk Df+vFk+dg s+ ++v +f++ Sevir.9G164400.1.p 36 FRKRLVLPDKLALHFRGK--ISRSIKLESRSGHTFDVQV-ANSNLGRLALQSGWELFVSAHDLKMLDFLVFKYDGISR--MKVLIFDA 118 4568********999877..6778***************.6888899*************************988544..59999986 PP | |||||||
2 | B3 | 41.6 | 2.3e-13 | 264 | 332 | 33 | 99 |
-SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 33 sktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++l+l++ +g+sW+v +++ r+++++ l kGW +F+ +n+L+ gD ++F+l ++++ +++v+++r+ Sevir.9G164400.1.p 264 ERKLMLRH-QGESWQVMCRVqvRRGPRKfQKLCKGWARFACDNNLQLGDLCLFELLKTKKYTMNVHIIRE 332 34577666.9********887777776668899***********************99*********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-19 | 23 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-19 | 24 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.533 | 25 | 119 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.19E-18 | 28 | 117 | No hit | No description |
SMART | SM01019 | 1.6E-9 | 28 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-15 | 30 | 118 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-17 | 228 | 332 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-16 | 228 | 331 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.05E-11 | 231 | 331 | No hit | No description |
PROSITE profile | PS50863 | 11.194 | 234 | 333 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0072 | 237 | 333 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-11 | 250 | 332 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MRKPGKECKV RDAYYFWNDY TDDQDKNFFK ILVGDFRKRL VLPDKLALHF RGKISRSIKL 60 ESRSGHTFDV QVANSNLGRL ALQSGWELFV SAHDLKMLDF LVFKYDGISR MKVLIFDASG 120 CEKVPPCFVT KNDINGTQSK EESIDVSSNY ANIPMKTPET KKKAGKQRDG SKIVNTGSSS 180 SSSESSGGST SSQEHEAHSV PSYIVPQRTN LTNVQKKKLK EKVGAICSEI PIYVCVMKKN 240 NISGRYQDMP FSGKYSDEYL PFKERKLMLR HQGESWQVMC RVQVRRGPRK FQKLCKGWAR 300 FACDNNLQLG DLCLFELLKT KKYTMNVHII REK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G164400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679254.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X2 | ||||
TrEMBL | A0A368SHB8 | 0.0 | A0A368SHB8_SETIT; Uncharacterized protein | ||||
STRING | Si038567m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-25 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G164400.1.p |