PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G079000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 279aa    MW: 28779.4 Da    PI: 8.3941
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G079000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-0597119123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ CgksFs+   L  H  +H
  Sevir.9G079000.1.p  97 FKCSVCGKSFSSYQALGGHKTSH 119
                         89**********99998888777 PP
2zf-C2H212.40.00047176198123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F++   L  H r+H
  Sevir.9G079000.1.p 176 HRCSICHKEFPTGQALGGHKRKH 198
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-1297120IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-497119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004697119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0397124IPR007087Zinc finger, C2H2
SuperFamilySSF576673.96E-997119No hitNo description
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SuperFamilySSF576673.96E-9171198No hitNo description
PfamPF139121.3E-12175200IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058176198IPR007087Zinc finger, C2H2
SMARTSM003550.043176198IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSSMELLHAV IPEKQREEEA AALAPAATTT SSSATATSGD EGAHVPQGWA KRKRSRRQRS  60
EEENLALCLL MLSRGGNHRV QAPPPVVPAA APAAAEFKCS VCGKSFSSYQ ALGGHKTSHR  120
VKLPTPPASA ASPAVTVVEA PAPITAIPPP PIEVREPATS STAASSDGAA ASSRVHRCSI  180
CHKEFPTGQA LGGHKRKHYD GGASAAASTD LLATAAAAET SEVGSSGNGS SAARAFDLNL  240
PAVPEFVFRC GKAGKMWEED EEVQSPLAFK KPRLLMTA*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G079000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9677900.0EU967790.1 Zea mays clone 306092 zinc-finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463836.11e-132zinc finger protein 1
SwissprotQ424301e-103ZFP1_WHEAT; Zinc finger protein 1
TrEMBLC5X0311e-131C5X031_SORBI; Uncharacterized protein
STRINGSb01g007170.11e-132(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-24zinc-finger protein 2