PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G122800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 451aa MW: 48235.1 Da PI: 8.5122 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.3 | 8.2e-11 | 64 | 87 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ Sevir.8G122800.1.p 64 EPDCSYYMRTGMCRFGMTCKFNHP 87 789********************8 PP | |||||||
2 | zf-CCCH | 39.5 | 9.3e-13 | 108 | 133 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ Sevir.8G122800.1.p 108 GQPECQYYLKTGTCKFGATCKFHHPR 133 689*********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.7e-12 | 155 | 179 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Sevir.8G122800.1.p 155 EKECAYYLRTGQCKFGSTCKFHHPQ 179 679********************97 PP | |||||||
4 | zf-CCCH | 39.2 | 1.2e-12 | 316 | 341 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ Sevir.8G122800.1.p 316 DQPECQFYMKTGDCKFGAVCKFHHPR 341 689*********************96 PP | |||||||
5 | zf-CCCH | 37.5 | 4e-12 | 361 | 386 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f++r+G Ck+G++CkF H+ Sevir.8G122800.1.p 361 PGEPICSFYSRYGMCKFGPNCKFDHP 386 5799*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.8E-4 | 61 | 88 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.253 | 61 | 89 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 64 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 66 | 89 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-4 | 67 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.77 | 106 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-10 | 108 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 112 | 134 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-5 | 152 | 179 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.24E-6 | 152 | 181 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.619 | 152 | 180 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 155 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 158 | 178 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-5 | 314 | 341 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.53 | 314 | 342 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-9 | 316 | 341 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-5 | 317 | 343 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 320 | 342 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 359 | 386 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-7 | 360 | 387 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.497 | 360 | 388 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 362 | 386 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 365 | 385 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MAAPSAGAGG GGGAAGEGPS SSAAAAAAAA TIGAHGVDQV AEAMWQMNLG EAVELGPYPE 60 RVGEPDCSYY MRTGMCRFGM TCKFNHPADR KLAVAAARMK GEYPQRSGQP ECQYYLKTGT 120 CKFGATCKFH HPREKAAMAT RVQLNELGYP FRPNEKECAY YLRTGQCKFG STCKFHHPQP 180 STMMVAVRGS GYSPGQSATS PGQHAYQGAV TSWPLSRSAS FIASPRWPGH SSYAQVIVPP 240 GLVQVPGWSP YTAQIGSSSS DDQQQTPGAA QYYTGSRQSG TPGMGDQGMF SSYQAGSVPV 300 GLYAVQRENV FPERPDQPEC QFYMKTGDCK FGAVCKFHHP RERIIPTPNC ALSSLGLPLR 360 PGEPICSFYS RYGMCKFGPN CKFDHPLGTV MFGHASSPTG EVPTSRRMLA HVPSHPEVSP 420 DSGSGRSRRI SHSDSQQIPP GERSTEREAS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G122800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034178 | 0.0 | BT034178.1 Zea mays full-length cDNA clone ZM_BFc0032H13 mRNA, complete cds. | |||
GenBank | BT060843 | 0.0 | BT060843.1 Zea mays full-length cDNA clone ZM_BFb0059K13 mRNA, complete cds. | |||
GenBank | BT064219 | 0.0 | BT064219.1 Zea mays full-length cDNA clone ZM_BFc0149L04 mRNA, complete cds. | |||
GenBank | BT085745 | 0.0 | BT085745.1 Zea mays full-length cDNA clone ZM_BFc0056E16 mRNA, complete cds. | |||
GenBank | EU956984 | 0.0 | EU956984.1 Zea mays clone 1579587 zinc finger CCCH type domain-containing protein ZFN-like mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004979251.1 | 0.0 | zinc finger CCCH domain-containing protein 63 isoform X1 | ||||
Swissprot | Q2R4J4 | 0.0 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A368S6Q6 | 0.0 | A0A368S6Q6_SETIT; Uncharacterized protein | ||||
STRING | Si026440m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-151 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G122800.1.p |
Publications ? help Back to Top | |||
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