PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G011200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 272aa MW: 30330 Da PI: 5.5726 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 57 | 3.9e-18 | 136 | 182 | 2 | 46 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTT CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpk 46 Dg++WrKYGqK+++g ++pr+YYrC+++ +C ++k ve+++++ Sevir.8G011200.1.p 136 YDGHQWRKYGQKNINGRQHPRNYYRCAYRerNCLATKTVEQQEQNAG 182 59**************************999*********9987643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-21 | 121 | 207 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-18 | 129 | 206 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.7E-25 | 135 | 207 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.053 | 137 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.8E-23 | 137 | 206 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MDSKSSLTMP PCGHGEEMME AMMRQQELVM QLRALVLPLL HGVDDTSADI AVQLFDDVIG 60 CNISVASKLE GCLMSTGAGG GTMVELVDDK SLVRKSMTSS TTGDRTEGQV KPNSVGQKRR 120 RNDKRSRSLV THVPHYDGHQ WRKYGQKNIN GRQHPRNYYR CAYRERNCLA TKTVEQQEQN 180 AGTSSAMAVE ENAKYTVVYY GDHTCKNHST SMVQAPQLVN MDLHNGEMDQ TTTNAQEPEA 240 DLDLPALLEV FDSSLINWQD WNEDVIYNLS P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G011200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980128.1 | 0.0 | probable WRKY transcription factor 26 | ||||
TrEMBL | A0A368S378 | 0.0 | A0A368S378_SETIT; Uncharacterized protein | ||||
STRING | Si027876m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15881 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 4e-15 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G011200.1.p |