PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G322600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 428aa    MW: 44152.5 Da    PI: 7.1868
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G322600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-05211230120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         y+C+ Cg++F+++  L  H 
  Sevir.7G322600.1.p 211 YTCKECGRTFTTNQALGGHA 230
                         9************9997776 PP
2zf-C2H213.50.00021273295123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C +C+k+F +   L  H+r+H
  Sevir.7G322600.1.p 273 HECRKCHKVFATGVALGGHMRVH 295
                         78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-9209233No hitNo description
Gene3DG3DSA:3.30.160.604.4E-4209229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.7E-7210235IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.281211238IPR007087Zinc finger, C2H2
SMARTSM003550.16211233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-4265295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.84E-9268295No hitNo description
PfamPF139122.7E-8273296IPR007087Zinc finger, C2H2
SMARTSM003550.027273295IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.928273300IPR007087Zinc finger, C2H2
PROSITE patternPS000280275295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MADGSSSLPP RRLADDDDLE EGQFVPAAYQ SSSDTDDYQA PAPAPPPQHA RRPRHLSMGD  60
VLALGRGDAL PSPTPASSCE SDGTISADGV PSPASVFRME PKRKRVVVAL DGSWAATGKR  120
GWAGGKPAAA APLNNPQSSN HSNVSGDSSS SSAQAVVVHN MPAPPPPPFA EQAQLVHLHH  180
PVAAPPPEAA AQLPQLVVPQ RADHQPPRRV YTCKECGRTF TTNQALGGHA AGHRSRQREA  240
EAAAAAAGMM PAGVDAAAFL AALRRSRREE APHECRKCHK VFATGVALGG HMRVHYTGPP  300
IVPTRKNKKR CLALALQPEE DIAAAAAPTP PGLSLALSIK AEEAPPSSPA PAGGVRVVRL  360
FGIDISPQVQ APSEQQQCSG TTTTGDCSSA GDPGIEAAGG GDVVSLGGLD IEGPLERKQQ  420
QMSGLFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G322600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684312.10.0zinc finger protein GLI4-like
TrEMBLA0A368S3E10.0A0A368S3E1_SETIT; Uncharacterized protein
STRINGSi012602m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.26e-10zinc-finger protein 2