PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G166800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ZF-HD | ||||||||
Protein Properties | Length: 258aa MW: 26945.8 Da PI: 8.7621 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.3 | 8e-33 | 45 | 99 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 +Y+eClkNhAaslGgha+DGCgEfmp+++++ +++a+l+CaACgCHRnFHRr +e Sevir.6G166800.1.p 45 VYRECLKNHAASLGGHALDGCGEFMPTPEADpADPASLRCAACGCHRNFHRRLPE 99 7*****************************99********************765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.9E-28 | 45 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-22 | 46 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.858 | 46 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.0E-30 | 46 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-8 | 208 | 248 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEAVVNVKYR PAMFLNGAAG AAAVAKKMRP AAAAAAAWGA GEAGVYRECL KNHAASLGGH 60 ALDGCGEFMP TPEADPADPA SLRCAACGCH RNFHRRLPEA PPSPPLLALP PPLPPAQPAP 120 ALQHVMREAP EDRLPAAFDD DETDESDEGS DFDEDRPLSP LPAPAMGPPG YLQPAPHMLL 180 ALSTGAPGAS IPAVVPRPPA SLGPMPAPGA ASAAARKRFR TKFSPEQKQR MQALSERLGR 240 RQRRRAAAPR NPPSQKT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 244 | RRQRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G166800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005636 | 2e-49 | AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02. | |||
GenBank | AP014965 | 2e-49 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 2e-49 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973533.1 | 1e-110 | zinc-finger homeodomain protein 10 | ||||
Swissprot | Q6ER21 | 3e-46 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | K3YID0 | 1e-108 | K3YID0_SETIT; Uncharacterized protein | ||||
STRING | Si013999m | 1e-109 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-27 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G166800.1.p |