PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G094200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 323aa    MW: 33594.7 Da    PI: 11.3782
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G094200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57370.63.2e-22171261297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         +fqr+wse+De+ +LqGl+ +   +g     d+++f e    s+   +++ ql+eK+rrLK+K++  +++++ g +p+  ++hd+++++l+
  Sevir.6G094200.1.p 171 KFQRIWSESDELRFLQGLLGC-GAQGLIFPRDLNRFSE----SMPQPYTRAQLSEKLRRLKNKYRSVSARVAGGLDPARLAPHDRDVLHLC 256
                         79*******************.567888889**99965....678899******************************************* PP

              DUF573  93 kkiWg 97 
                         +++W+
  Sevir.6G094200.1.p 257 SRLWD 261
                         ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-19172261IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MFAFPENAPT TPGASEANSA GNMFAFLAAP ERPNTPTGPT PRGGFVFAAS PEGPLTPTSR  60
GSSTSGLTFL ASPKQPLTPT GPIAGGREPS LMATGSGAAA PLISPKRANR PTGPPGPCPR  120
PPGARKLPIK RRSPRPSSSP PSSSSSASSD PLRAPTAGGG GRSDQQQPPF KFQRIWSESD  180
ELRFLQGLLG CGAQGLIFPR DLNRFSESMP QPYTRAQLSE KLRRLKNKYR SVSARVAGGL  240
DPARLAPHDR DVLHLCSRLW DPANAATSPF ASGAGSSGNK RRRANPRGTP LPPPDASGDC  300
NSHDYNGISS SAPGLFPEVS FA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G094200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9677790.0EU967779.1 Zea mays clone 306034 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982018.11e-117probable transcription factor At3g04930
TrEMBLK4ABK01e-115K4ABK0_SETIT; Uncharacterized protein
STRINGSi036257m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86953243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-10DNA-binding storekeeper protein-related transcriptional regulator