PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G001200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 365aa MW: 39097.4 Da PI: 6.351 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.2 | 1.4e-13 | 259 | 344 | 3 | 84 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 k+lt+sdv + gr+vlpkk ae+ +++ + l++ d +W++k+++ ++ks++y+l+ eFvk +gL++gD ++++ Sevir.6G001200.1.p 259 KELTKSDVANVGRIVLPKKDAEASlpPLVQGDPLILQMDDmVLPVTWKFKYRFwpNNKSRMYILE-AAGEFVKTHGLQAGDALIIYK 344 899******************99999666666666777774455*******99888888888888.99****************993 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-20 | 256 | 355 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-7 | 257 | 357 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.85E-15 | 257 | 345 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.7E-10 | 259 | 345 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.63E-19 | 259 | 354 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MGQMGGPDGD GGGGGAHPHP YHHYHYQALL AAVQNPDQSL HPSFPLPFHH VPLHHPAPPG 60 APAAGPGADA AAAAPSTHNA APHSQPSRGF SDWSASNSAF ASVAAQPAPA TTTTTPFHYN 120 LSQSYALWTH YMLNKNALPY TSYPAAPQDE NSHPLHHTHI PPDKDSGSAS SLGFDSFTTM 180 SLGPNICAHM SPMEGSISAN EADNSEDLPT VVTNSDEMDT RNSDEVHPDS VATLPESKPS 240 HESCTTKFNS GEYQVVLRKE LTKSDVANVG RIVLPKKDAE ASLPPLVQGD PLILQMDDMV 300 LPVTWKFKYR FWPNNKSRMY ILEAAGEFVK THGLQAGDAL IIYKNSVPGK FIIRGEKAIQ 360 QTNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 3e-31 | 248 | 345 | 4 | 101 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 3e-31 | 248 | 345 | 4 | 101 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G001200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated during the early stage of iron deficiency (at protein level). {ECO:0000269|PubMed:27137867}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038952 | 0.0 | BT038952.1 Zea mays full-length cDNA clone ZM_BFb0345D11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974288.1 | 0.0 | B3 domain-containing protein IDEF1 | ||||
Swissprot | Q6Z1Z3 | 1e-121 | IDEF1_ORYSJ; B3 domain-containing protein IDEF1 | ||||
TrEMBL | K3YMV3 | 0.0 | K3YMV3_SETIT; Uncharacterized protein | ||||
STRING | Si015586m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11346 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 9e-33 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G001200.1.p |