PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G474900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 662aa MW: 71889.6 Da PI: 9.5069 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.8 | 2.1e-07 | 562 | 611 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r++++ E e lv+av+qlG+g+W+ + + +Rt ++k++w ++ Sevir.5G474900.1.p 562 RMPFSVGEVEALVEAVEQLGTGRWRDVKMHAFdgaDHRTYVDLKDKWKTL 611 7899999********************9999899*************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.17E-7 | 368 | 444 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 9.286 | 374 | 444 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 15.733 | 557 | 616 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-9 | 558 | 613 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-7 | 561 | 614 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.00E-16 | 564 | 613 | No hit | No description |
SuperFamily | SSF46689 | 9.37E-15 | 564 | 644 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0032204 | Biological Process | regulation of telomere maintenance | ||||
GO:0042162 | Molecular Function | telomeric DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MVSQKRLGYG SRGRQIPAMP RVPNSVRGKR TTRRKKNEMC AFDLLASVAG TLLTDQDSSS 60 YVPNTSVAAT SYARNRKSVK EEYFDEILHL KNVAVKKDCG SGCVVGSGGV SALPRKGNDG 120 LAENSLTRNE DESVLKSLTV KSNMLARDSS VRCTRPCEIS RGLGIICEYG AFGVFHPGSS 180 SSAEAGQAHQ AEPKVIRSKA DGHTAALDSL FDSVDLDGRP PALVSSDSSS GVLLCSHDKE 240 HKAASLCQVE MQHTADRDDD ENSSGCTHPS TTGNEGYKPH FLGNHRIRKL LASKVRKAAR 300 NKTSGGMSSK GSKLNFCGKK IPTTRQKVQR TNFKRKKLAR GTTPFAKGML TGATGTSFRM 360 QGQNKSCGSE DYHVKLRIKS FNIPELFVEI PETATIGSLK RTVMDVVTSI MEGGLRVGVL 420 LQGKSIQDDS KTLRQAGICH GEKLNNIDFT LECERQQDSP SGVIIAEEMD FVSADIVEPL 480 ARMKYEEPFP GTKGGGGNQQ PIKAYPNDSF AGCVHRPVEM ASQDASASLQ AIIPVAASDL 540 NALAIVPICK TRRSEFGQRR TRMPFSVGEV EALVEAVEQL GTGRWRDVKM HAFDGADHRT 600 YVDLKDKWKT LVHTASISPQ QRRGEPVPQE LLDRVLSAQA YWSQQQAKLH GKAPLPEICL 660 A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 1e-54 | 550 | 650 | 5 | 105 | Telomere binding protein TBP1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G474900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701182.1 | 0.0 | telomere-binding protein 1 isoform X1 | ||||
Refseq | XP_022682806.1 | 0.0 | telomere-binding protein 1 isoform X1 | ||||
Swissprot | Q9LL45 | 0.0 | TBP1_ORYSJ; Telomere-binding protein 1 | ||||
TrEMBL | K3XFC2 | 0.0 | K3XFC2_SETIT; Uncharacterized protein | ||||
STRING | Si000591m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10824 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 8e-76 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G474900.1.p |
Publications ? help Back to Top | |||
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