PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G257600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 329aa MW: 34343.2 Da PI: 6.9393 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80.7 | 1.5e-25 | 135 | 196 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg +WrKYGqK++ g+++pr+Y+rCt++ +C++ k+v+r++ dp +++++Y+g+H++ Sevir.5G257600.1.p 135 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqSCHASKQVQRTDGDPLLFDVVYHGSHTCA 196 58***************************98999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-26 | 123 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.898 | 130 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-24 | 130 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-36 | 135 | 197 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-24 | 136 | 195 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MEGIMSEEKC ALVSELVRVL EMVRQLEEHM AGQQQQGGVG GAAAGGDLRC RALVCTMRDS 60 IDRAVHMAMS SCADGRGGQP ESPPSGGDGS PRSAGSDQGG DFRGRGNAAG QCKKRKTLPK 120 RSTQVRVSAV HVTPLDDGLS WRKYGQKDIL GAKYPRAYFR CTHRHTQSCH ASKQVQRTDG 180 DPLLFDVVYH GSHTCAQAQG AGAHPSGNQG ARPAAASGEH SQARAQPAAA AEQTASPSPG 240 LEAAGPVLPF SLPSNVPARG ADDAGGVGVR VTASPFVSPA TPESLVRDAP HHDVELASTS 300 NSPMGMAEMD FMFPLDATDF LENPASYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-22 | 128 | 195 | 1 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G257600.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728419 | 1e-128 | KJ728419.1 Zea mays clone pUT6724 WRKY transcription factor (WRKY74) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969356.1 | 0.0 | probable WRKY transcription factor 53 | ||||
TrEMBL | K3XJY0 | 0.0 | K3XJY0_SETIT; Uncharacterized protein | ||||
STRING | Si002203m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 6e-35 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G257600.1.p |