PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G257000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 451aa    MW: 46460.1 Da    PI: 8.9825
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G257000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019100120323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         Cp Cgk F+++     H+++H
  Sevir.5G257000.1.p 100 CPFCGKEFRNHKAVCGHMKVH 120
                         *******************99 PP
2zf-C2H210.90.0014354376123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg+ F+   +L  H+r+H
  Sevir.5G257000.1.p 354 HVCKVCGREFPGGLQLGGHMRKH 376
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.74398125IPR007087Zinc finger, C2H2
SMARTSM003550.003498120IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.1E-899120No hitNo description
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576676.1E-8301328No hitNo description
PROSITE profilePS501579.058306333IPR007087Zinc finger, C2H2
SMARTSM003551306328IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280308328IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-5351382No hitNo description
PfamPF139123.9E-6353377IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806354381IPR007087Zinc finger, C2H2
SMARTSM003550.028354376IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280356376IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAGSPEDRWR IRRRRLADLY GDGPEEGEVV PAGYHSDADT EEYYNTNRGC SSDSVPADYR  60
GASTFPAAAH NYGSASTSSA SANNNGGGAS SSPAAQVLAC PFCGKEFRNH KAVCGHMKVH  120
REQGIGKANK GIKRNAAAVG GWGGTGKRGC SGSRGRAAPP IDEPDQSMAV VVAEAKIVFN  180
PMPLAFAAPN PPPAPTATET PNPPPAPTAT ETPNQSTPMA SPTPKMSSSS VPAASVMTND  240
PVESSSAPPM RDDAMETVVA GAANPPTEAV VHLHDAPPPP PPAAGEQAHE QPVAPPPGGR  300
QNPKGYTCKR CGMWFRTHQG LGGHVVGHKN REIAVALHGG AVRNGRDAKP GKAHVCKVCG  360
REFPGGLQLG GHMRKHWTGS PFNKKKPRLV APPLRLALSI KADEASPAPR PAVAGRVLLF  420
GIDIGAGVKT PAAQECSPAP EASASASGEQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G257000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3XQ020.0K3XQ02_SETIT; Uncharacterized protein
STRINGSi003982m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.13e-12C2H2 family protein