PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.5G134100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 380aa MW: 40282 Da PI: 7.2089 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.7 | 9.8e-09 | 119 | 139 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C FaHg Sevir.5G134100.1.p 119 ACPDFRK-GGCKRGDACEFAHG 139 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.3E-5 | 114 | 140 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.159 | 115 | 141 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-6 | 118 | 141 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-7 | 119 | 139 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 149 | 172 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 149 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MMMMGEGVSV PPWSHHLPVS GGGGGGGGDE MTPYLLAALR QYLPYNDAGA AADDEEEAAA 60 AAMAAGVDGY GSDEFRMYEF KVRRCSRARS HDWTECPFAH PGEKARRRDP RKYHYSGTAC 120 PDFRKGGCKR GDACEFAHGV FECWLHPARY RTQPCKDGTA CRRRVCFFAH TPDQLRVLPP 180 QQSSPRGTAA AASPLAESYD GSPLRRQAFE SYLTKSIMSS SPTSTLMSPP KSPPSESPPL 240 SPDGAAAYRR GSWPGVGSPV NEVLASLRQL RLSKANSSPS GGWAGYPSSA VAYGSPTAAG 300 LYSLPSTPTT MGGGFMANLE PLDVSFGGGE EEPVQRVESG RALRAKVFEH LSREGAVSVE 360 PATGGIGGPD VGWVSDLIN* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.5G134100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817903.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | Q9FU27 | 0.0 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A2S3HYP5 | 0.0 | A0A2S3HYP5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00253.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-94 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.5G134100.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|