PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G250300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 320aa MW: 34255.7 Da PI: 6.1849 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.8 | 1.6e-14 | 43 | 87 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ie+ s r+v fskR g++K A EL C+a va+++fs gk Sevir.4G250300.1.p 43 KLIESRSARYVCFSKRHDGLFKNAVELAARCGAHVAIVVFSRAGK 87 569***************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.334 | 35 | 95 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.1E-18 | 35 | 94 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-21 | 36 | 107 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-12 | 37 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-18 | 45 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-12 | 57 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-12 | 72 | 93 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEDEKEVVAM TAPEAEAESV CGEAGGERKR KKKTLGRQKI EIKLIESRSA RYVCFSKRHD 60 GLFKNAVELA ARCGAHVAIV VFSRAGKPYS IGYPSVNPVV DRYLDPASAS AAAPCAAAVA 120 RLAPILREYE SEKERLEKAM KAEVIKRKAL DAAARAAGVR AAADDVCRAG IPELLAMLAA 180 LERVQAEAAE RVREATVEEV MMQHVRAVGA SDHAFHYPTA GAFTADSGAG SSHPDPGAMD 240 AQTTMLMGGD VDHAPMHFAS MMLPTYYLPP PPLNYGSNHN QLAGYGYNYD LGDGSGHDAA 300 NELEGYYYYG TTTTCNFFG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 31 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G250300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813008.1 | 2e-85 | MADS-box protein AGL71-like | ||||
TrEMBL | A0A368QXI0 | 0.0 | A0A368QXI0_SETIT; Uncharacterized protein | ||||
STRING | Si008680m | 1e-161 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13309 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-19 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G250300.1.p |