PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G123200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 456aa    MW: 49073.4 Da    PI: 4.9969
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G123200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.1e-27177231156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++
  Sevir.4G123200.1.p 177 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 231
                         6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.924174233IPR017930Myb domain
SuperFamilySSF466896.72E-19175234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27175234IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-26177231IPR006447Myb domain, plants
PfamPF002496.3E-8180229IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MLAVSPVRCA DADECGGGAG MEMEEIGPVS DLDFDFTVDD IDFGDFFLRL EDGDALPDLE  60
VDPAEIFTDF EAIATGSDGV MDQEVPSVQP LTDAVHLDAL DPCSVVLGED NTTRADVEEG  120
KGECNHAEEV VPGNGDFGGG GGTVLAEEKS PSSTTSSSQE AESRHKSSSK HSHGKKKAKV  180
DWTPELHRRF VQAVEQLGID KAVPSRILEI MGIDSLTRHN IASHLQKYRS HRKHMLAREA  240
EAASWTQRRQ MYAAGGASTA VKRPDSNAWT VPTIGFPPPP PPPPPPHPMQ HFGRPLHVWG  300
HPTPGVESPR VPMWPRHLVP RAPTPPWAPP PPSDPAFWHH PYMRGPAQMP GQMAPCMAVP  360
MPAARFPAPP VRGVLPCPPP MYRPLVPPVL ANKSQQDAQL QLQTQPSSES IDAAIGDVLS  420
KPWLPLPLGL KPPSVDSVMD ELQRQGVADV PPACG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-17174229257ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G123200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965431.10.0probable transcription factor GLK1
SwissprotQ5Z5I41e-176GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLK3XWU20.0K3XWU2_SETIT; Uncharacterized protein
STRINGSi006400m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.13e-48GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]