PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G001100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 620aa MW: 67464.3 Da PI: 5.2692 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.8 | 7.9e-48 | 32 | 162 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp+GfrF+Ptdeelv++yLk+k++g+ ++ i++vd+ +ePw+Lp k +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd Sevir.4G001100.1.p 32 LPVGFRFRPTDEELVCHYLKPKIAGRVHPDLLLIPDVDLSACEPWELPaKaLIRSDDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATGKD 122 79*************************999888***************5346667888********************************* PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + s+ g+l+g+kktLvf++grap+g++t+W+mheyr Sevir.4G001100.1.p 123 RLIRSRpAGTLIGIKKTLVFHRGRAPRGHRTSWIMHEYRT 162 *****989999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-53 | 31 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.543 | 32 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-26 | 33 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MAAAQAHAQA QRRGERKAMP SPPPPPPPPG ALPVGFRFRP TDEELVCHYL KPKIAGRVHP 60 DLLLIPDVDL SACEPWELPA KALIRSDDPE WFFFAPLDRK YPGGHRSNRS TAAGYWKATG 120 KDRLIRSRPA GTLIGIKKTL VFHRGRAPRG HRTSWIMHEY RTAEPQLQQG QNGSFVLYRL 180 FDKHEEEEPE AADAADSPST SSAADPPPIA PAVKAENLCQ PASAKMAHLL TTLSNNEPTA 240 AQEGDPLLDV LAQLPDLQPE QTYDGFPTIT SPMRPYTDHP FLGNVGGQDL SAYIDSIIAH 300 QDLEDLLVNP SLAKTVEHPT GNFEPIPTSL LVPSSSSSNN NRSPENSWAN LDTERLLLIQ 360 GADGTDAAAC CSSATKILQF DTGDANHDTG PQTDSASGVS AEASHLYNQY QLQSASIPQM 420 ELARSDMTDS DAFNGLEGSA PEPLMQQLSV SNFTDPHQGT ALRRIRLVHS IQRASVTEPV 480 LTSNSEGEDE ERSCYSTDNS STNNEDYANA GGAMHSQGGG VIPTQVVSST EVTGELQDFI 540 FDEGASSLHG VVRHGGNLKR RLKEEYMETN QDAGEILQHS IRVPREPSLR RRQRISSVVR 600 VLCLALVVIL VFVGLWKCI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-43 | 31 | 188 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-43 | 31 | 188 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-43 | 31 | 188 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-43 | 31 | 188 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-43 | 31 | 188 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 7e-43 | 31 | 188 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 7e-43 | 31 | 188 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 7e-43 | 31 | 188 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 7e-43 | 31 | 188 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 7e-43 | 31 | 188 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 7e-43 | 31 | 188 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 7e-43 | 31 | 188 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 7e-43 | 31 | 188 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 7e-43 | 31 | 188 | 16 | 170 | NAC domain-containing protein 19 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G001100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964251.1 | 0.0 | uncharacterized protein LOC101755267 isoform X2 | ||||
TrEMBL | A0A368QP71 | 0.0 | A0A368QP71_SETIT; Uncharacterized protein | ||||
STRING | Si006105m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13413 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.2 | 6e-63 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G001100.1.p |