PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G389400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 354aa    MW: 40874.3 Da    PI: 8.5415
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G389400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-1629116199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk +     +++g +++p kfa++ +g+  +   + l+ +sg++W++ l  +k+ ++ +l + W++Fvka+ Lke+D ++F+++g+s+f 
  Sevir.3G389400.1.p  29 FFKLM--TGDFAKG-ISIPDKFAKNLNGI-GC---IDLKAPSGETWNIGL--EKHADELFLMSRWEDFVKAHVLKENDLLIFTYSGNSSF- 109
                         55555..4445555.9*******777777.34...9**************..***********************************999. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                           v +f++
  Sevir.3G389400.1.p 110 -DVLIFEA 116
                         .8888865 PP
2B3469.2e-15246344199
                         EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                  B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                         f++vl  s+v ++ + l++p++f+++h  +  +  ++tl    +  +W vk+ y ++ +++      ++Fv++n+L+egD++ F+l++  +
  Sevir.3G389400.1.p 246 FVTVLQMSHVRRKnNFLIFPNRFVADHFDS--RLHEITLVRpNRKDKWCVKYYYARSAQGV-RNYTFSKFVQENRLREGDICAFELMKGsR 333
                         5666666666665377899********655..34478888835669******888888884.445788*****************997769 PP

                         EE..EEEEE-S CS
                  B3  89 efelvvkvfrk 99 
                         + +++v+++rk
  Sevir.3G389400.1.p 334 RVTMTVHAIRK 344
                         99999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.66126117IPR003340B3 DNA binding domain
CDDcd100171.54E-1628114No hitNo description
Gene3DG3DSA:2.40.330.102.4E-1728119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-1828121IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.5E-1329117IPR003340B3 DNA binding domain
PfamPF023621.1E-1329115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-18238343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-16239343IPR015300DNA-binding pseudobarrel domain
CDDcd100176.46E-14244343No hitNo description
SMARTSM010191.3E-11246345IPR003340B3 DNA binding domain
PfamPF023621.2E-13246344IPR003340B3 DNA binding domain
PROSITE profilePS5086310.221247343IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMVDKRCESC RKWQEHYYWE HMDVTKIRFF KLMTGDFAKG ISIPDKFAKN LNGIGCIDLK  60
APSGETWNIG LEKHADELFL MSRWEDFVKA HVLKENDLLI FTYSGNSSFD VLIFEASGCE  120
KVSSLFGNRT APDLHKHFDY MADRGKQAEH YALTDSKETT APSQLAGFPH HASTSKKSGG  180
RNPRQLPESP NSSNNHVKCD DIREEDSDEE YAKSKYCYTR IAERLSDEEK EEIISLASIR  240
SDNPAFVTVL QMSHVRRKNN FLIFPNRFVA DHFDSRLHEI TLVRPNRKDK WCVKYYYARS  300
AQGVRNYTFS KFVQENRLRE GDICAFELMK GSRRVTMTVH AIRKVHGRFV LVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G389400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963038.10.0B3 domain-containing protein Os12g0592300
SwissprotQ2QMT21e-127Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A368QMU40.0A0A368QMU4_SETIT; Uncharacterized protein
STRINGSi022505m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-32B3 family protein