PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G389200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 96aa MW: 10984.5 Da PI: 6.7817 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.8 | 3.3e-12 | 27 | 95 | 1 | 75 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 ff v+ d ++ l++pkkf+++ gg+ s ++l+ ++g+++++++ k ++ +l++GW F++a +L+ Sevir.3G389200.1.p 27 FFVVM--LDEDFKSGLIIPKKFVKNVGGQ--ISERIKLKVRDGETYDIEV--AKEHNELLLQSGWAVFASAYELE 95 56666..56666667********888888..66689999999********..*******************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-13 | 21 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-14 | 23 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.38E-12 | 25 | 95 | No hit | No description |
PROSITE profile | PS50863 | 9.559 | 25 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-10 | 27 | 95 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MSTSSQNTIC KDCAANHYWH QMDKRRFFVV MLDEDFKSGL IIPKKFVKNV GGQISERIKL 60 KVRDGETYDI EVAKEHNELL LQSGWAVFAS AYELE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G389200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002442423.2 | 7e-28 | B3 domain-containing protein LOC_Os12g40080 | ||||
Refseq | XP_004963037.1 | 4e-28 | B3 domain-containing protein LOC_Os12g40080 | ||||
Swissprot | Q2QMT6 | 1e-28 | Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080 | ||||
TrEMBL | A0A1Z5R7B7 | 2e-32 | A0A1Z5R7B7_SORBI; Uncharacterized protein | ||||
STRING | OMERI12G12100.1 | 2e-32 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 2e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G389200.1.p |