PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G374400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 280aa    MW: 31676.2 Da    PI: 8.3923
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G374400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.61.6e-231260250
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        ri+n+  rqvtfskRr g+ KKA EL vLCda+va+++fs +g+l++++
  Sevir.3G374400.1.p 12 RIDNSVSRQVTFSKRRRGLAKKARELAVLCDADVAMLVFSDKGRLHDFA 60
                        8**********************************************97 PP
2K-box84.72e-281252111197
               K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         e+ + +++ ++ kL+++ie Lq++qR+l+Ge+LesL+++e qqLe+q++++l++iRs+K+++ll++ieel+kke+ l e+n  L+k+
  Sevir.3G374400.1.p 125 EEMQGNMSYDHIKLRSRIEALQKSQRNLMGEQLESLTFREVQQLEHQIDSALRNIRSRKDHVLLSSIEELRKKERFLVEQNSLLQKE 211
                         666789999*************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.128363IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-29362IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-24471IPR002100Transcription factor, MADS-box
CDDcd002654.77E-31468No hitNo description
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-25525IPR002100Transcription factor, MADS-box
PfamPF003197.1E-231259IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-252540IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-254061IPR002100Transcription factor, MADS-box
PfamPF014868.3E-25126211IPR002487Transcription factor, K-box
PROSITE profilePS5129715.442128218IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRGRGKVEV RRIDNSVSRQ VTFSKRRRGL AKKARELAVL CDADVAMLVF SDKGRLHDFA  60
AHGSNPVLSS HCMEWTLMFT LLQTFLQEMK QNPCQKRWWC FINQLVRKER YLLCEGGDVM  120
EDHPEEMQGN MSYDHIKLRS RIEALQKSQR NLMGEQLESL TFREVQQLEH QIDSALRNIR  180
SRKDHVLLSS IEELRKKERF LVEQNSLLQK EKAALDPSLH AKDSPASSTA AEAAVPNLNI  240
CAGDSDEPGP PAAPPGTATG GLPWWMLRPP AVGQRLEEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-131342082397Developmental protein SEPALLATA 3
4ox0_B1e-131342082397Developmental protein SEPALLATA 3
4ox0_C1e-131342082397Developmental protein SEPALLATA 3
4ox0_D1e-131342082397Developmental protein SEPALLATA 3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G374400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666553e-80BT066655.1 Zea mays full-length cDNA clone ZM_BFb0041O16 mRNA, complete cds.
GenBankKJ7275053e-80KJ727505.1 Zea mays clone pUT5364 MADS transcription factor (MADS34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962945.11e-148MADS-box transcription factor 20
TrEMBLA0A368QMZ81e-146A0A368QMZ8_SETIT; Uncharacterized protein
STRINGSi025315m3e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-45AGAMOUS-like 8