PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G084500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 244aa MW: 27628.3 Da PI: 6.5607 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 59.6 | 6.2e-19 | 96 | 159 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT...EEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk...vveitYegeHnhe 59 Dg++WrKYGqK++++s++ rsYYrCt++ +C+++k v++++++++ + +++Y +H+++ Sevir.3G084500.1.p 96 YDGHQWRKYGQKNITNSKHQRSYYRCTYKheqNCMATKTVQQQEHNTTetvMYTVVYYAHHTCK 159 59**************************9999********998766542227899******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 5.49E-20 | 89 | 159 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.8E-21 | 91 | 159 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-28 | 95 | 160 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.837 | 97 | 158 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-22 | 97 | 159 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MKLHTRYLPQ ASSTCADESE CFACDHQPAI NEIEKVQALV AQLRAIILPE YEMIPDLRLE 60 LVSQLFGSLQ DCASKAILEL WRYGESTSYM TPVPHYDGHQ WRKYGQKNIT NSKHQRSYYR 120 CTYKHEQNCM ATKTVQQQEH NTTETVMYTV VYYAHHTCKA NTGPALPHVI ETSTPQSAMS 180 PDRIIASQET VSPHTGSHKI LENGHATQQL TEDMQVLLKK IACAPLDSDI WEMDAILCRI 240 NAC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 9e-13 | 97 | 159 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G084500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805693.1 | 1e-137 | probable WRKY transcription factor 63 | ||||
TrEMBL | K3ZF32 | 1e-171 | K3ZF32_SETIT; Uncharacterized protein | ||||
STRING | Si025181m | 1e-172 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3258 | 30 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 2e-14 | WRKY DNA-binding protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G084500.1.p |