PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G017300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 428aa    MW: 46568.9 Da    PI: 6.6012
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G017300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.9e-15295390395
                         EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         k lt+sdv++ gr+vlpkk ae +    +   + +  l + d e   +W++k++y  ++ks++y+l+  + eFvk +gL+++D++v++  +
  Sevir.3G017300.1.p 295 KDLTNSDVGNIGRIVLPKKDAEPNlpilED--KDGLILEMDDfELPAVWKFKYRYwpNNKSRMYILE-TTGEFVKRHGLQAKDILVIY--K 380
                         789******************999886432..34556777775555*********888888888888.9*******************..4 PP

                         S.SEE..EEE CS
                  B3  87 r.sefelvvk 95 
                         + +++++v +
  Sevir.3G017300.1.p 381 NkKSGRYVAR 390
                         4477777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-17291389IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-23291401IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.501293395IPR003340B3 DNA binding domain
SMARTSM010194.4E-9293395IPR003340B3 DNA binding domain
PfamPF023627.5E-12295390IPR003340B3 DNA binding domain
CDDcd100176.48E-18297388No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MANAKGSSAG GTGGAGHGGD LGRAISHEQY QAFLASVHRA AAPGAANVHH HQYPAGLIQS  60
PPMAMPAHHV PVPRPQIAVP PPPPFVRPPE HSGQSQPPTG HYQDYSPYGN TASSQYTRGF  120
ADWGTHNNAL ISLAHATTFG SGSNGIHQNF TSYNTHTWTA TYMPRNPYNN AYGPATMNMM  180
LQTPSFHSNS HEKDSGAGFA ASSFTVSPTV VPTSPFQLMS PKSPNYTSTQ IFEETNNLED  240
TSTVFGSGDM ESDNSEEPDP TPVAEIEDQN QGNEHIVNAM SKTVNCQDYR IILRKDLTNS  300
DVGNIGRIVL PKKDAEPNLP ILEDKDGLIL EMDDFELPAV WKFKYRYWPN NKSRMYILET  360
TGEFVKRHGL QAKDILVIYK NKKSGRYVAR AVKAEDIQVP ECECIKAGNL SEECGFAVSP  420
SAKKVII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-342833893109B3 domain-containing transcription factor LEC2
6j9c_D3e-342833893109B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G017300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963379.10.0putative B3 domain-containing protein Os04g0676650
TrEMBLK3ZF380.0K3ZF38_SETIT; Uncharacterized protein
STRINGSi025187m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-36B3 family protein