PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G416900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 350aa    MW: 37904.3 Da    PI: 6.0064
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G416900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.84.4e-3581180297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88 
                         lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg  +sf+++h+q i
  Sevir.2G416900.1.p  81 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFSFRSPHEQAI 171
                         79************************99877778***************************************8999************** PP

              DUF573  89 felskkiWg 97 
                         fe+++ iW+
  Sevir.2G416900.1.p 172 FEIARNIWR 180
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.8E-3182179IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MPPTGDDPSA AAGISFPDAD GGGGGDSEDG DFADAHLLDP TDPSLHNPTT SSATGLPHAV  60
PAGGSGGGPV TSGNGGERRP LFQRLWTEED EIVILRGFAE FTAARGTAFA SHQYDTDPFY  120
EDMRRRLQLD FSKSQLVEKL RRLKRKYRNC VSRLRESGAT FSFRSPHEQA IFEIARNIWR  180
PTNKHGRDPS ADSDDEDAAA NTSPNGEVKS PSGRQRRRRR ATDFAAASGT APATSMVQPP  240
QPVQLPVSVP VKMEDSLPAL PQTQMPVTVT MDGSEPLRLP VMSPQSVINV GTNPFGTKLP  300
EPPLGLPMEG EKWRKQRILE LEVYLKRIEL LQNQAKATLE ELKSSTPGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G416900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416520.0BT041652.1 Zea mays full-length cDNA clone ZM_BFb0025B02 mRNA, complete cds.
GenBankEU9699720.0EU969972.1 Zea mays clone 337956 hypothetical protein mRNA, complete cds.
GenBankJX4284550.0JX428455.1 Zea mays subsp. mays clone pUT3049 GBP12 GeBP type transcription factor mRNA, partial cds.
GenBankKJ7267970.0KJ726797.1 Zea mays clone pUT2289 GeBP transcription factor (GBP12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679515.10.0probable transcription factor At3g04930
TrEMBLA0A368Q8B50.0A0A368Q8B5_SETIT; Uncharacterized protein
STRINGSi030239m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-35DNA-binding storekeeper protein-related transcriptional regulator