PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G212800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ZF-HD
Protein Properties Length: 368aa    MW: 37813.5 Da    PI: 8.1774
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G212800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.48.3e-343993558
         ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                         Y+eClkNhAaslGghavDGCgEfmps+g++ +++++lkCaACgCHRnFHRr ve
  Sevir.2G212800.1.p 39 LYRECLKNHAASLGGHAVDGCGEFMPSPGANpADPTSLKCAACGCHRNFHRRAVE 93
                        7***************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.0E-283992IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.2074091IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-234090IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.3E-314091IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.54E-16208276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-28210277IPR009057Homeodomain-like
TIGRFAMsTIGR015654.0E-23218274IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEAMDVKYKP LMFPNGAAVK KVKPAAVVPA AVAAAGEPLY RECLKNHAAS LGGHAVDGCG  60
EFMPSPGANP ADPTSLKCAA CGCHRNFHRR AVEGSPPPPA PLALPPPPVP ASVLHGQPHR  120
GGEETPEDRL PGVADDSDSD SDGSEYDEER SVSPPPPPHH VLAPVAQQPP PPAYFTIPSA  180
SHMLLSLGSG AQGAAAQRLP PAQLTPSSAP PPGGAMPRKR FRTKFTAEQK QRMQELSERL  240
GWRLQKRDEA IVDEWCRDIG VGKGVFKVWM HNNKHNFLGG HSARRSASSS APAGPGGGAA  300
PVHTSTANAG VAAPSFSPSA ITPPPPVLTS SPPTATGFNI NGAASSAPTV TAGHPDNVNG  360
PSSPQSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-212182761775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G212800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632440.0BT063244.1 Zea mays full-length cDNA clone ZM_BFc0042E24 mRNA, complete cds.
GenBankEU9637460.0EU963746.1 Zea mays clone 272337 ZF-HD homeobox protein mRNA, complete cds.
GenBankJX4285110.0JX428511.1 Zea mays subsp. mays clone pUT3109 ZHD2 ZF-HD type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698877.10.0zinc-finger homeodomain protein 9
SwissprotQ6ER211e-101ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A368Q3690.0A0A368Q369_SETIT; Uncharacterized protein
STRINGGRMZM2G161315_P011e-153(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-25zinc finger homeodomain 1