PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G186800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 325aa    MW: 33951.7 Da    PI: 5.8088
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G186800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.55.6e-28121180258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                         dDg++WrKYGqKe+ g+++prsYYrCt++   gC ++k+v+r++edp++++++Y g H++
  Sevir.2G186800.1.p 121 DDGHSWRKYGQKEILGAKYPRSYYRCTHRhsqGCAATKQVQRADEDPTLFDVIYLGAHTC 180
                         8***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-27117181IPR003657WRKY domain
SuperFamilySSF1182906.15E-25119180IPR003657WRKY domain
SMARTSM007742.6E-40120182IPR003657WRKY domain
PROSITE profilePS5081121.505121178IPR003657WRKY domain
PfamPF031069.5E-27121180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MASVVDGNGG GGGGGRVVME LSHIKDLVRQ LEGHLGGGSQ LQAQEVCRSL ASQISSLTER  60
SITLITSYYC LDAGRKRSAA ASLLSDVSDA PFKTTKKRKT TEKVKNQVRV SSAAGGDIPA  120
DDGHSWRKYG QKEILGAKYP RSYYRCTHRH SQGCAATKQV QRADEDPTLF DVIYLGAHTC  180
VQSGAAVAAA GEAATATQQP PEHNPNAHSL LQSLSSSLTV KTEGLAAAPE PPQGWVATTP  240
FCLSSTPASG CLQAPAELSP FSAPSTTSEN WGLSPATSDS NQHAAVSLPP FEVVAGDVEF  300
EFGEVVSALV GIPDDDFDIS SFFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-23121180968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G186800.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956612.10.0probable WRKY transcription factor 30
TrEMBLK3ZVA00.0K3ZVA0_SETIT; Uncharacterized protein
STRINGSi030531m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-31WRKY family protein