PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G188500.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 322aa MW: 34890 Da PI: 5.9729

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G188500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21	7.3e-07	191	236	18	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +rsR RK+++i+eLe+ v++L++ +L+ ++ +l ++ +l +e+ Sevir.1G188500.1.p 191 QRSRVRKLQYIAELERTVDSLQNMGADLAVRVASLFQLHNALSMEN 236 79**************************999999999888888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	4.39E-16	186	230	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.9E-4	191	246	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MSRSPHLPPR CPPLGPQITR RDDSLFTQSC RFPSGDPFYG EPPCWLDDLL ADSGKVPNLP 60 PLRRACSDSD AILDALSVFQ SPIHPIEEGD LSPGGEAKDL LDAVEGGESS SLVEASCVYG 120 PNSPRQKSSL TTSESSMVNA VLENVPSNPL QYLTIDASSG VNGNVANGTA DATDAFGHPD 180 QDKSFKRRPG QRSRVRKLQY IAELERTVDS LQNMGADLAV RVASLFQLHN ALSMENEQLR 240 IQISNLQHAK LIKDGQTQAL KNEAERLKQM SARHRRSRSV TSCYNMSPYG DAPAVNWQMP 300 DMAKLSLNDS SVSPRGGGYG L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G188500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952673.1	0.0	basic leucine zipper 34
TrEMBL	K3YU63	0.0	K3YU63_SETIT; Uncharacterized protein
STRING	Si017809m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8137	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-16	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.1G188500.1.p