PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.1G079900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 20972.2 Da PI: 6.9095 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 21 | 71 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp r + ++lg+f++ae Aa+a++aa+++++g+ Sevir.1G079900.1.p 21 KYRGVRRRP-SGRYAAEIRDP---A-RkTPIWLGTFDSAEAAARAYDAAARNIRGA 71 8********.7*********8...2.35*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.6E-31 | 21 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-29 | 21 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.99E-14 | 21 | 77 | No hit | No description |
Pfam | PF00847 | 6.3E-12 | 21 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 21 | 79 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.944 | 21 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-8 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-8 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MRRSRLPPVP APAGHGGAEV KYRGVRRRPS GRYAAEIRDP ARKTPIWLGT FDSAEAAARA 60 YDAAARNIRG AAARTNFPSS AASPAVAPVA VVPPPPQHPV TAASAAATSS HSSTVESWSG 120 GGGSGAPGAV TAGFLRGAAP AAEEDCRSYC GSSSSVLCED GASGAGAGDE AAAPPRCSPL 180 PFDLNVADPE AAAAADEMDW RCDTLLHL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 21 | 78 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.1G079900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951832.1 | 1e-143 | ethylene-responsive transcription factor 3-like | ||||
TrEMBL | A0A368PHY4 | 1e-142 | A0A368PHY4_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G322672_P01 | 9e-69 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53170.1 | 3e-13 | ethylene response factor 8 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.1G079900.1.p |