PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G060400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 196aa    MW: 20174.9 Da    PI: 8.2947
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G060400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002278100123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++C + F ++  L  H++ H
  Sevir.1G060400.1.p  78 FACHYCRRQFYSSQALGGHQNAH 100
                         78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-676106No hitNo description
PROSITE profilePS5015711.13678105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEAEVDKERG GTWPNGAGGN GHRGHGSGAA GAAPVELNLL AGMVGVNAVR AAGLPVVVVV  60
PDVARSAAAA EPEPAQLFAC HYCRRQFYSS QALGGHQNAH KRERTLARHR ADAEPPLVLA  120
HHARAHGGAP PFAVHGAFVP PPAISAPALE WMRAPSGRPL PVAVAGGERW LTGGYVDSPG  180
AGQEEMPKLD LTLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G060400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040872e-33AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09.
GenBankAP0149582e-33AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-33CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8354072e-33CT835407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122P15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954687.11e-104zinc finger protein 6
TrEMBLK3YVV91e-133K3YVV9_SETIT; Uncharacterized protein
STRINGSi018405m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.17e-15zinc finger protein 7