PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G393900.1.p
Common NameSETIT_038960mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 239aa    MW: 26569.1 Da    PI: 5.6784
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G393900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.59.9e-20955147
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                        k+ie++  r+v fskRr+g+ KKA ELS+LC+a va+++fs++g+ +
  Seita.9G393900.1.p  9 KKIESEEARSVCFSKRRAGMCKKAAELSILCGAMVAIVVFSPSGRPF 55
                        68*****************************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.189161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-26278IPR002100Transcription factor, MADS-box
CDDcd002651.56E-32271No hitNo description
PRINTSPR004041.9E-18323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRQKIEMKK IESEEARSVC FSKRRAGMCK KAAELSILCG AMVAIVVFSP SGRPFSFGSP  60
SFKAVYNRFR TLIDPAISGE SCDGSSEETN TTHELLEYSE LEQSIEGEKK RKKRLDETII  120
ERDIDARVMD LLTTEVYSSG LDDLQEFHKK LVAIQDIVKE KIKQVMQEER HPTRPYPPTF  180
IDLVSKYMLD MQIDTHISST TLNSNHTAAD GLDVNGPSTS SVHAVGTSVN YPSNQLDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107114EKKRKKRL
2108112KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G393900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986970.11e-178agamous-like MADS-box protein AGL29
TrEMBLA0A368SQH01e-177A0A368SQH0_SETIT; Uncharacterized protein
TrEMBLK4AJ951e-177K4AJ95_SETIT; Uncharacterized protein
STRINGSi038960m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-14AGAMOUS-like 6